LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa4g04578	ATGGTGTCTCCAAAAAATATAGGAAAATATAGACTCGGCAGAACCATAGGAGAAGGTACATTCTCTAAGGTTAAGCTTGCTTTCATTGGAAACAATGGTGAGAAAGTAGCAATCAAGGTCATTGACAAGAATATGGTCTTGAAAAACAATCTTAAGTATAAGGTACAAAGTGAGATTAGAACAATGAAACTTCTACATCATCCTAATATTGTTAGAATTCACGAGGTTATTGGTACAAAGACAAAAATATACATTGTGATGGAGTATGTATCCGGAGGTCAACTGTTGGACAAGATGTCTTATGTTGGTAAGTTGAATGAATGTGAGGCAAGAAAATTGTTCCAGCAACTTGTTGATGCTGTCGATTACTGCCATAATAAGGGCGTTTTTCATCGCGATTTAAAGCCAGAAAACTTGCTCCTTGACAGCCAGGGAAATCTCAAAGTGTCTGATTTTGGATTAAGTGCATTGAGTAAGCCTAATGATGTCTTAAATACAAGGTGTGGATCGCCGTGCTATGTGGCTCCTGAGCTGCTGATGAGCAAAGGGTATGATGGAGCAGCTGCTGATGTTTGGTCATGTGGTGTGATTCTTTTTGAGTTACTTGCTGGTTTTCTACCATTTGATGACCAAAACTTGATGAGGTTATACCATAAGATATGCAGAGCAGAATATGTATGCGCTCCATGGTTTACTCAAAGTCAAAAGAAATTAATCACCAAAATACTCGAACCGCGTCCTGATAAGCGGATAAATATTTCAGATATTATTGAAAATGACTGGTTTCAAATAGATTACAAACCTTCTTGTGCATATGAAATTGATCCGATTATTAACTTGGATGACAAAAGTGATGCTTTTGACCCAATTGAGGAGAAAACTACGAAGTCAACGATAACCAAGTCCTCGAGCTTCATTAATGCGTTCCAACTGATAGCCATGTTTCAAGACCTTGATCTATCTGCAATTTTTGAAGAACAGGATCACAAGAAGCAGATAAAAATGTTTGGATCCCAACATACAATCAGTGAAACAGTAGAAAAAATAGAAGCTGCTGCAACAGATGTGAGACTGTCAGTGATGAAAATGAACAAATTTAAGATGAAAATGCACCCAAAACCGACATTGACTAGAAGTTCTAGATCATACTTTGACCTATCTGCTGAGGTGATAGAAGTTGCTCCAGCTCATTGTGTTGTACAAATATCAAAATCTGCAGGAGATCTAAGAATGTACAATGAATTTTGTGAAAGTTTGTCAAGTCTGCTGAAAGAAAAATCTAGTACGCCATCACATGACCAAGACTCCGTGGATCAACGCAAAGTTAGCAGCATAGAAAAGAAAGATGATGAATGCTATGCAAAGCCAAACTGTGAAGATTTTTGTGGCTATAACTCTGCTTGA	1404	0.3761	MVSPKNIGKYRLGRTIGEGTFSKVKLAFIGNNGEKVAIKVIDKNMVLKNNLKYKVQSEIRTMKLLHHPNIVRIHEVIGTKTKIYIVMEYVSGGQLLDKMSYVGKLNECEARKLFQQLVDAVDYCHNKGVFHRDLKPENLLLDSQGNLKVSDFGLSALSKPNDVLNTRCGSPCYVAPELLMSKGYDGAAADVWSCGVILFELLAGFLPFDDQNLMRLYHKICRAEYVCAPWFTQSQKKLITKILEPRPDKRINISDIIENDWFQIDYKPSCAYEIDPIINLDDKSDAFDPIEEKTTKSTITKSSSFINAFQLIAMFQDLDLSAIFEEQDHKKQIKMFGSQHTISETVEKIEAAATDVRLSVMKMNKFKMKMHPKPTLTRSSRSYFDLSAEVIEVAPAHCVVQISKSAGDLRMYNEFCESLSSLLKEKSSTPSHDQDSVDQRKVSSIEKKDDECYAKPNCEDFCGYNSA	467

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa4g04578	467	MobiDBLite	consensus disorder prediction	426	448	-	-
	Vifa4g04578	467	CDD	CIPK_C	307	424	-	-
	Vifa4g04578	467	Pfam	NAF domain	304	362	IPR004041	GO:0007165
	Vifa4g04578	467	SUPERFAMILY	Protein kinase-like (PK-like)	7	263	IPR011009	-
	Vifa4g04578	467	FunFam	Non-specific serine/threonine protein kinase	2	89	-	-
	Vifa4g04578	467	ProSiteProfiles	NAF domain profile.	301	325	IPR018451	GO:0007165
	Vifa4g04578	467	FunFam	Non-specific serine/threonine protein kinase	3	303	-	-
	Vifa4g04578	467	SMART	serkin_6	10	262	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa4g04578	467	Gene3D	Transferase(Phosphotransferase) domain 1	90	276	-	-
	Vifa4g04578	467	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	129	141	IPR008271	GO:0004672\|GO:0006468
	Vifa4g04578	467	FunFam	Non-specific serine/threonine protein kinase	301	427	-	-
	Vifa4g04578	467	ProSiteProfiles	Protein kinase domain profile.	10	262	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa4g04578	467	Gene3D	Phosphorylase Kinase; domain 1	2	89	-	-
	Vifa4g04578	467	ProSitePatterns	Protein kinases ATP-binding region signature.	16	48	IPR017441	GO:0005524
	Vifa4g04578	467	Gene3D	Kinase associated domain 1, KA1	301	426	-	-
	Vifa4g04578	467	Pfam	Protein kinase domain	10	262	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa4g04578	467	MobiDBLite	consensus disorder prediction	428	448	-	-
	Vifa4g04578	467	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	8	418	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa4g04578	Vifa-Chr4	1448365779	1448368524	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa4g04578	2	419	CBL-interacting serine-threonine protein kinases	AT1G01140	47.518	8.75e-137	399

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Vifa4g04578		Pkinase	5.6e-70	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa4g04578	-		-	mtr:11440772	754.592