Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04566 ATGTGTAATAAAAGGTTTCAATGTTTTAGAATTAATAATCCACAAAACTTTATTACGATGGATAGTCCCACCGCCGTTCGATCTCCGGCCACCACGGCTGGTTCGGGTTCCGGCTCGAACGAGGATGGCCGGCGTGTTAAATTTTTGTGTAGCTTTTTAGGTAGTATAATGCCCCGTCCGCAGGACGGGAAGCTGCGTTATGTTGGCGGGGAGACGCGAATTGTGAGTGTTTCGAGAGAGGTTAGTTTTGAGGAGTTGATGGGGAAAATGAGGGAGTTATACGAGGGTGTTGCTGTGTTGAAGTATCAGCAGCCTGATGAGGATCTTGATGCACTTGTTTCTGTTGTGAATGATGATGATGTGGTTAATATGATGGAGGAGTATGATAAGTTGGGGTCTGGGGATGGGTTTACTAGGCTTAGGATTTTTCTGTTTTCTCAATCGGAGCAGGATGGTTCCGCCCATTTTATTGACGGGGATGATTCGGAGAGGAGGTATGTGGATGCGTTGAATAGTTTGAATGATGTTTCTGAGCTTAGACGATTGCAACAAATGGAGTTTCCCATGATTGGGACGGTTGAGGATGTCCATGTGGGTGATCAGTTTGTGAATCAGATGGGTATGGAAAATGGGATTCATAGCCAGAGAAGTGGGGAATTTGCTATGCCGCCGTATAACTTGCATCATATAGGTATTCAGCATCAGCAACCTATGGGACAGAGGTATAGTGAAATTGATGCTCAGTGGAATCCTGGTTATTACTCTCCTAGGCATCATGGTCTTAGTCATCATGACTCTAGATCATCATTGGTTGATTATCCATCTTCTCCGTCTGCAACGAGATACCGTGTGCCCTTTCCTGAGATGCCAGATAAGGGAATTGATAGAGTGTCGGAAGAATATGCTCGGCATCATGTAAGTCATCACCATCCTTTGTATGACAATCAGCCGCAGTATCCTGAGAATGTTGTGTGGCTGCAAACTGGAGCTGCACATGGCCATGATGGTAATAATATATGTGAGCACTGTCGAATGAATTTTCAGAGAGCTCAACCGCATTTGGAGCATCCTAATGTGCTTCCACCGGTTTCCGTTCCGTGTCCAGAATGCCACTCAAGCAGGGAAGCTATCAATGCCAATGTTGATGCCAAGTTACAGCCTTCTATGTATCCCAATGATGCTCAGAATCATGAGAGGGCTTGTGGTTTGCAGCATCAGAGTTCTGGAAGAGTGTCTGATCATTATGTTGGTGATGTTCCGCTCATTAATTTCCCTCCTGGACATGGTAGTTTGATTGATGGGCATGCTGTTCCTTCCGGTCATGTTCACCAACAGGTTGGACCTGAATTGGGGGTTGAACTGTTCCCTGACCAAACCATGGCTGCTATGCCACATCTAAAAATTCCTCCATTGGAAGAATCCAGTGCGCAGTATGGAAACGCACCTTCTCCTTATGGAGTAGATAATAATTACGCCATGCCTCGTGGACATGCACCTGGTTATACTCTTTGGACAAATGGTCCGACTCCAGTTCATATTGGACCGCCATACGAGGCAACGACTCTACATCAGCCGGTTGATGGTGTGACAAATGCTGGACTATTCAGAGGAGAGGGAAGACCAGGTTTTTTCATTGGACCGGATAGTCAAAGTCTTTGGGTTGATTCATCACAGAAATTTTCTGGTCATGATGGGTCGGCCATCCCAGAATACCCTTATGCAAATGCTACAAAGTTAAATCCAATTCCCACCGGTCAGGAAATTCAACACCCGATTATTGTTGATCCCACCATTCATCCCCCAAATAACGTAAATGCTGGTACTTGCTTGGAACCTGTGCAGCTGCAAAAATCTTCTCTTAATATCGTCCACAATAACGAGGTTTTAAAAAATGATGCTCATTTGACTGAAGTGTTGAATTTGCAATCTATAAGTTTGCTTGGAGAAGGAAAAGAAGCCAAAAATGAAGACAAGCTTGAAAACTTTAATGTGCAAAGGATATCTTCTCTAGATCAAAATCAAATTGTTGAAGATGTATCCAACGCTGCTGCTTCTGCCGTTGAGTTTAATAATTCATCTCTGAAACCTTCATCCGAGTTTGGACTTGTCGAGAAACTGGTTGATACAGTCGGTTCTTCTCCCGGAGATTCTCAGCATTTAGTTGATCAATTCAATATCTTGCCTGAGTTGATTGCTTCTGTTAAAAAGGCTGCGTTGGAATATCATGATGAGGTGAAACCTACAGGTGAAGAGCACGCGGATTGTCAGACGAACAATTTGAATACCAAAGAAGAAGCTGAAAAAGAAGTTGAGCCAGTGAATGCTCATGGTGATTTAGAGTTAGACGCTGAAAATGACCACGTAGATACTTCTAAAATCGAGCCTACAAAAGCTGAGGCAGAAGCAATTGCTAGGGGATTGCAGACTATTAGAAACGATGATTTAGAGGAGATCCGTGAGCTAGGCTCTGGAACTTACGGAGCTGTTTATCATGGGAAATGGAAAGGTTCCGATGTCGCCATTAAGAGAATAAAAGCCAGTTGTTTTGCAGGAAGACCATCTGAAAGAGCAAGATTGATTGCAGATTTCTGGAAGGAGGCATTGATGCTTAGTTCATTGCATCATCCTAATGTTGTCTCCTTCTATGGTATTGTTCGCGATGGACCTGATGGGTCTTTGGCAACAGTAACAGAGTTCATGGTTAATGGATCTTTGAAACAGTTCTTGCATAAGAAGGACAGAACGATAGATCGTCGGAAGAGGCTCATTATAGCTATGGATGCCGCATTTGGGATGGAGTATTTGCATGGAAAGAACATTGTGCATTTTGATTTGAAATGTGAGAATCTATTGGTCAATATGAGAGATCCACAAAGGCCTGTCTGCAAGATTGGTGATTTGGGTCTATCGAAGGTTAAACAACACACACTAGTGTCTGGAGGGGTACGAGGAACTTTGCCATGGATGGCACCCGAGCTTCTTAGTGGGAAAAGCAATATGGTGTCAGAGAAGATTGATGTTTACTCATTCGGGATAGTCATGTGGGAGTTACTCACCGGCGATGAACCTTATGCTGATATGCATTGTGCTTCAATAATTGGAGGAATTGTGAACAACTCTTTACGTCCTCAAATCCCGTCATGGTGTGATCCTGAATGGAAGTCTCTAATGGAAAGTTCCTGGGCTTCTGATCCTATAGAAAGACCATCATTTTCAGAAATTTCCAAGAAGCTGAGGACTATGGCTGCTTCAGTGAATGTGAAATAG 3267 0.4365 MCNKRFQCFRINNPQNFITMDSPTAVRSPATTAGSGSGSNEDGRRVKFLCSFLGSIMPRPQDGKLRYVGGETRIVSVSREVSFEELMGKMRELYEGVAVLKYQQPDEDLDALVSVVNDDDVVNMMEEYDKLGSGDGFTRLRIFLFSQSEQDGSAHFIDGDDSERRYVDALNSLNDVSELRRLQQMEFPMIGTVEDVHVGDQFVNQMGMENGIHSQRSGEFAMPPYNLHHIGIQHQQPMGQRYSEIDAQWNPGYYSPRHHGLSHHDSRSSLVDYPSSPSATRYRVPFPEMPDKGIDRVSEEYARHHVSHHHPLYDNQPQYPENVVWLQTGAAHGHDGNNICEHCRMNFQRAQPHLEHPNVLPPVSVPCPECHSSREAINANVDAKLQPSMYPNDAQNHERACGLQHQSSGRVSDHYVGDVPLINFPPGHGSLIDGHAVPSGHVHQQVGPELGVELFPDQTMAAMPHLKIPPLEESSAQYGNAPSPYGVDNNYAMPRGHAPGYTLWTNGPTPVHIGPPYEATTLHQPVDGVTNAGLFRGEGRPGFFIGPDSQSLWVDSSQKFSGHDGSAIPEYPYANATKLNPIPTGQEIQHPIIVDPTIHPPNNVNAGTCLEPVQLQKSSLNIVHNNEVLKNDAHLTEVLNLQSISLLGEGKEAKNEDKLENFNVQRISSLDQNQIVEDVSNAAASAVEFNNSSLKPSSEFGLVEKLVDTVGSSPGDSQHLVDQFNILPELIASVKKAALEYHDEVKPTGEEHADCQTNNLNTKEEAEKEVEPVNAHGDLELDAENDHVDTSKIEPTKAEAEAIARGLQTIRNDDLEEIRELGSGTYGAVYHGKWKGSDVAIKRIKASCFAGRPSERARLIADFWKEALMLSSLHHPNVVSFYGIVRDGPDGSLATVTEFMVNGSLKQFLHKKDRTIDRRKRLIIAMDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPQRPVCKIGDLGLSKVKQHTLVSGGVRGTLPWMAPELLSGKSNMVSEKIDVYSFGIVMWELLTGDEPYADMHCASIIGGIVNNSLRPQIPSWCDPEWKSLMESSWASDPIERPSFSEISKKLRTMAASVNVK 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04566 1088 Pfam Protein tyrosine and serine/threonine kinase 816 1078 IPR001245 GO:0004672|GO:0006468
Vifa4g04566 1088 CDD STKc_MAP3K-like 821 1078 - -
Vifa4g04566 1088 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 808 902 - -
Vifa4g04566 1088 MobiDBLite consensus disorder prediction 774 797 - -
Vifa4g04566 1088 SMART serkin_6 815 1082 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04566 1088 ProSiteProfiles Protein kinase domain profile. 815 1081 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04566 1088 ProSitePatterns Serine/Threonine protein kinases active-site signature. 940 952 IPR008271 GO:0004672|GO:0006468
Vifa4g04566 1088 PANTHER SERINE-THREONINE PROTEIN KINASE 101 1081 - -
Vifa4g04566 1088 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 903 1088 - -
Vifa4g04566 1088 Gene3D - 64 148 - -
Vifa4g04566 1088 MobiDBLite consensus disorder prediction 20 41 - -
Vifa4g04566 1088 Gene3D Transferase(Phosphotransferase) domain 1 902 1087 - -
Vifa4g04566 1088 CDD PB1_UP2 49 145 - -
Vifa4g04566 1088 SMART PB1_new 60 145 IPR000270 GO:0005515
Vifa4g04566 1088 Gene3D Phosphorylase Kinase; domain 1 800 901 - -
Vifa4g04566 1088 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 65 147 - -
Vifa4g04566 1088 SUPERFAMILY Protein kinase-like (PK-like) 807 1076 IPR011009 -
Vifa4g04566 1088 Pfam PB1 domain 61 146 IPR000270 GO:0005515
Vifa4g04566 1088 PRINTS Tyrosine kinase catalytic domain signature 934 952 IPR001245 GO:0004672|GO:0006468
Vifa4g04566 1088 PRINTS Tyrosine kinase catalytic domain signature 1005 1027 IPR001245 GO:0004672|GO:0006468
Vifa4g04566 1088 PRINTS Tyrosine kinase catalytic domain signature 897 910 IPR001245 GO:0004672|GO:0006468
Vifa4g04566 1088 PRINTS Tyrosine kinase catalytic domain signature 1049 1071 IPR001245 GO:0004672|GO:0006468
Vifa4g04566 1088 SUPERFAMILY CAD & PB1 domains 62 151 - -
Vifa4g04566 1088 MobiDBLite consensus disorder prediction 20 39 - -
Vifa4g04566 1088 ProSitePatterns Protein kinases ATP-binding region signature. 821 842 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04566 Vifa-Chr4 1446023166 1446027431 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04566 40 1088 MAP Kinase Kinase Kinase AT5G57610 52.351 0.0 997
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Vifa4g04566 PK_Tyr_Ser-Thr 5.4e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04566 - - tpra:123909448 1830.45