Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04550 ATGAGAACTGAGTTCCGCGGGAATGCTACTGTTGAAGGTTCTGATGGGAATGATGCAATAAGTAATCAGAGGAATTGCTTGTCTGATCATAAGGAACTAGTTTCTCCTTATCAGTGTTTAGTGGTGTCTCTCGAATCTCTCATCATGAGACCGCACACCCAAGGTTCCCAATCTGAAGGGGATTCTAACAACACAACTATATTTGTTGGAGGGCTTGATTCTGAAATCAGCAATGAGGATCTCAGACAACCGTTTTTGCAATATGGCGACGTTGTCTCCGTGAAAATTCCAATCGGTAAAGGATGTGGCTTTGTTCAACTTGCTGACAGAAAGAATGATAAAGATACAATGCAGGAATGTGTTTCCGAATTCATCAGTTTTATTACTAGCGAGGCGAGTGAGAAATGTCAGAAAGAGAAGAGAAAGACCATTAATGGAGACGATTTGTTATGGGCTATGGCTACTTTAGGATTTGAGGACTATATAGAACCGCTTAAGGTCTACCTAGCAAGATGA 516 0.4128 MRTEFRGNATVEGSDGNDAISNQRNCLSDHKELVSPYQCLVVSLESLIMRPHTQGSQSEGDSNNTTIFVGGLDSEISNEDLRQPFLQYGDVVSVKIPIGKGCGFVQLADRKNDKDTMQECVSEFISFITSEASEKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLAR 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04550 171 ProSitePatterns NF-YB/HAP3 subunit signature. 120 136 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vifa4g04550 171 Gene3D Histone, subunit A 111 171 IPR009072 GO:0046982
Vifa4g04550 171 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 65 171 IPR000504 GO:0003723
Vifa4g04550 171 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 67 112 IPR000504 GO:0003723
Vifa4g04550 171 SUPERFAMILY RNA-binding domain, RBD 58 113 IPR035979 GO:0003676
Vifa4g04550 171 MobiDBLite consensus disorder prediction 1 20 - -
Vifa4g04550 171 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 111 171 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vifa4g04550 171 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 114 153 IPR003958 -
Vifa4g04550 171 Gene3D - 56 110 IPR012677 -
Vifa4g04550 171 PRINTS CCAAT-binding transcription factor subunit A signature 117 135 - -
Vifa4g04550 171 PRINTS CCAAT-binding transcription factor subunit A signature 136 154 - -
Vifa4g04550 171 PRINTS CCAAT-binding transcription factor subunit A signature 155 171 - -
Vifa4g04550 171 SMART rrm1_1 66 128 IPR000504 GO:0003723
Vifa4g04550 171 SUPERFAMILY Histone-fold 111 170 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04550 Vifa-Chr4 1441359090 1441359750 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04550 111 171 CCAAT-HAP3 Transcription Factor Family AT2G38880 88.525 1.20e-35 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vifa4g04550 RRM_1 5.7e-09 CL0221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04550 K08065 - psat:127100806 122.864