Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04541 ATGAATAATTTTCATCCTAATACTTCTCCTCACTTAATTAACCAACCAGAAAATGATCATCATCATCATCATCATCATCTGAATCTAGATCTTGTTCTTGAACCATCTTCTTCATCTTCATCATCTTCACCTATAAGTTCAATGGAGCAAAGGATATTCTCATGCAACTACTGTCAGAGAAAGTTTTACAGTTCTCAAGCTTTGGGAGGACACCAAAATGCTCACAAACTTGAAAGGACACTTGCCAAAAAGAGTAGAGAGATAACTTCAGCCATGCAATCTTATCATGATTTACCAGAACACCCTTCAAACTACACTACTTTTGGTCATGGAAATTCTCATCTTGACAATAACCATGGACAAGGAGGTCATTTGATGAGGTATGGTGGAAGAAAAGAATTTAGTTATGGTAATTCTAAGGAAGGTGTGAGTTCTTCTTGGTCAAGGGGTTATAACTATCCTTCTGAACATGGTCAGGAAGATATTAACCAACTTGACTTGTCTTTAAGGCTTTGA 516 0.3663 MNNFHPNTSPHLINQPENDHHHHHHHLNLDLVLEPSSSSSSSSPISSMEQRIFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREITSAMQSYHDLPEHPSNYTTFGHGNSHLDNNHGQGGHLMRYGGRKEFSYGNSKEGVSSSWSRGYNYPSEHGQEDINQLDLSLRL 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04541 171 MobiDBLite consensus disorder prediction 137 171 - -
Vifa4g04541 171 Gene3D Classic Zinc Finger 34 105 - -
Vifa4g04541 171 MobiDBLite consensus disorder prediction 1 25 - -
Vifa4g04541 171 SUPERFAMILY beta-beta-alpha zinc fingers 49 80 IPR036236 -
Vifa4g04541 171 FunFam Zinc finger protein 2 31 100 - -
Vifa4g04541 171 ProSiteProfiles Zinc finger C2H2 type domain profile. 53 80 IPR013087 -
Vifa4g04541 171 MobiDBLite consensus disorder prediction 138 162 - -
Vifa4g04541 171 ProSitePatterns Zinc finger C2H2 type domain signature. 55 75 IPR013087 -
Vifa4g04541 171 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 17 120 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04541 Vifa-Chr4 1438287833 1438288348 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04541 3 88 C2H2 Transcription Factor Family AT5G57520 64.835 9.33e-26 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04541 - - gmx:100778014 183.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04541 4 1438287833 1438288348 Vifa4g04541 4 1438287833 1438288348 ECH