Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04539 ATGTCACCTTCTCCTTCCCTTTCTCCTACTCCTCCGCAGCAACAAGAATTCATTTTCAGATCTAAACTCCCCGACATCGAAATCCCAACACACCTTCCACTACACTCTTACCTTTTCCAAAACCTCTCTCAATTCCACAACCATCCATGCCTCATCAACGGCGACACCGGCGAGACGTTCACTTACTCCGACGTCCACCTCACCGCCCGCAAAATCGCTTCCGGTTTAAACACAATCGGAATCAATCAAGGCGACGTCATCATGATCGTCCTCCGCAACTCTCCACAATTCGCACTCACGTTCCTCGGTGCCTCATTCCGCGGCGCGGTCATCACCACCGCTAATCCATTCTACACCTCGTCAGAGCTAGCTAAACAAGCCACCGCAACAAAAACAAAACTCATCGTAACTCAATCAGCATACGTCAACAAATTCAAGGAGTTTGCAAAAATCAACAACATCAAAATCGTATGCATTGATGATCCATCATCTTTATCGTTATCATTATCAACATCATTATCATTGGAATCGGAATCGAAACAACTTGTTGTGGATTTCTCAATTTTAACAAATGCCGATGAAAACGAAGCACCGGAAGTGAAGATAAATCCTAACGATATCATTGCCTTACCGTTTTCTTCCGGAACTTCTGGACTTCCAAAAGGCGTTATGCTAACCCATGAAAATTTAGTGACAACAATATCACAGTTAGTTGACGGAGAAAATCCTCACCAATACACTAACAGCGACGACGTGTTACTCTGTGTGTTACCCATGTTTCATATCTACGCACTCAATTCGATTCTACTATGCGGAATTCGAGCTGGTGCTGCGGTGTTGATTGTGGAGAAATTCGAGATTAAATCAGTTTTGGAAGTAATTGAAAAGTATAAAGTGACGGTAGTGTCGTTTGTGCCACCGATTGTTTTAGCGTTGGTGAAGAGTGGAGAGTCGCATCGGTACGACTTGTCGTCTATTAGGGTGATGATAACAGGTGCTGCACCGATGGGAATGGAACTTGAGCAAGCCGTCAAGGATAGGATGCCGCAAACCGTGCTTGGACAGGGATATGGGATGACAGAGGCAGGACCACTTTCAATTAGTTTAGCATTTGCAAAGGAACCGTTTAAGACAAAACCAGGTGCATGCGGTACTGTAGTAAGAAACGCCGAGATGAAAATAGTGGACACAGAAACAGGTGTTTCTCTTCCAAGAAACATAGCTGGTGAAATTTGCATTAGAGGCACAAAGGTTATGAAAGGATATTTAAATGATCCGGAGGCGACAAAGAAAACTATAGACAATGATGGATGGCTACACACTGGTGACATTGGTTTAATCGATGACGATGACGAACTTTTCATCGTCGATCGATTAAAAGAGTTGATTAAATACAAAGGATTTCAAGTAGCTCCTGCCGAGCTCGAAGCATTGCTCATTGCTCACCCTAACATTTCTGAAGCTGCTGTTGTACCATTGAAAGATGAAGTTGCTGGAGAACTACCAGTTGCATTTGTTGTTCGATCAAACGATTCAAAGATTAGCGAGGATGAAATCAAGCAATACCTTTCGCAACAGGTTGTGTTTTACAAGAGAATCAACAGAGTTTACTTCACGGACGTGATTCCTAAAGCAGCCTCAGGCAAAATTCTGCGAAAGGAATTAACTGCAAGACTTAACGAAGGACTAGTGGTGTGA 1698 0.434 MSPSPSLSPTPPQQQEFIFRSKLPDIEIPTHLPLHSYLFQNLSQFHNHPCLINGDTGETFTYSDVHLTARKIASGLNTIGINQGDVIMIVLRNSPQFALTFLGASFRGAVITTANPFYTSSELAKQATATKTKLIVTQSAYVNKFKEFAKINNIKIVCIDDPSSLSLSLSTSLSLESESKQLVVDFSILTNADENEAPEVKINPNDIIALPFSSGTSGLPKGVMLTHENLVTTISQLVDGENPHQYTNSDDVLLCVLPMFHIYALNSILLCGIRAGAAVLIVEKFEIKSVLEVIEKYKVTVVSFVPPIVLALVKSGESHRYDLSSIRVMITGAAPMGMELEQAVKDRMPQTVLGQGYGMTEAGPLSISLAFAKEPFKTKPGACGTVVRNAEMKIVDTETGVSLPRNIAGEICIRGTKVMKGYLNDPEATKKTIDNDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPNISEAAVVPLKDEVAGELPVAFVVRSNDSKISEDEIKQYLSQQVVFYKRINRVYFTDVIPKAASGKILRKELTARLNEGLVV 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04539 565 CDD 4CL 28 555 - -
Vifa4g04539 565 Gene3D - 461 562 IPR045851 -
Vifa4g04539 565 Pfam AMP-binding enzyme C-terminal domain 474 549 IPR025110 -
Vifa4g04539 565 Pfam AMP-binding enzyme 40 465 IPR000873 -
Vifa4g04539 565 ProSitePatterns Putative AMP-binding domain signature. 210 221 IPR020845 -
Vifa4g04539 565 SUPERFAMILY Acetyl-CoA synthetase-like 9 561 - -
Vifa4g04539 565 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 14 556 - -
Vifa4g04539 565 Gene3D - 16 460 IPR042099 -
Vifa4g04539 565 FunFam 4-coumarate--CoA ligase 2 461 562 - -
Vifa4g04539 565 FunFam Long-chain-fatty-acid--CoA ligase FadD 20 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04539 Vifa-Chr4 1437512628 1437515771 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04539 16 527 Monolignol Biosynthesis Gene Families AT1G51680 63.250 0.0 652
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04539 K01904 - gmx:548034 833.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04539 4 1437512628 1437515771 Vifa4g04539 4 1437512628 1437515771 ECH