Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04529 ATGGATACGGACGAGGAGTGCTCAATTGTTCTTCAGTTGTCTGAAAATGATCCTTTCTTTGATGAAAAGAAGAAACTACTACAGTGTAAGGGGTTTAGTCCCAAGGAACGGATATTTCTCCGGCATGCTTCAGAATCTCATAGGATGAATGATACCGTAAAGATCTTACTTCAGATTGCAAGAATCATACAGTTGAATGAGCTGGAACTCTATTTTGCTGAAGACGATGCATCGGTGGAGTTTTACAGCCCCAGGAATGAGTTGGAGGCTCTCAATTCAATTATTTTGGTCACTGATAAATCACTTTCTAGTTGTACATTTTCCCATACAAATATCCTGCAAGGGTTACGCCAAACAGTTCTTGATTTACTTTCTGATTTTGGGGACCAAAAAAATACAAAGGGAGCAATTGAGAAGCACCACATTTGTGAGAAAGAAGAACATCTGATCGAGTGGGGTAAAAGCCTTGGTGTAAAGACACAATTAAAAATAGCTTATGTTGAAGGAGCAGGACGGGGAATGATAGGAGGGAAAGATCTAAAAGTTGGAGATACTGCCATAGAAATTCCTGTGTCCCTTATCATTTCCGAGGAGCTTGTGCTTGAAACTGATATGTATCGTCTCTTAAAAGAGGTTGATGGCATATCATCTGAGACAATATTGCTACTATGGAGTATGAAAGAGAAATACAACTGTGATTCAAAATTCAAATTTTACTTTGACACACTTCCAGAAAAATTTAATACAGGATTGAGTTTTGGGATTGAAGCGATTACAATGTTAGATGGAACCTTGCTGTTTGAAGAGATAATGCAAGCAAGAGAGCATCTGCATGCTCAGTATGATGAGTTGGTTCCTGCTCTGTGCAATGGTTTTCCTGATATATTTCCTCCAGAGCTGTACACGTGGGAGAAATTTCTATGGGCTTGTGAGCTTTGGTATTCCAATAGCATGAAGATAATGTTTTCAGATGGAAAGCTGAGGACATGTTTGATCCCTCTTGCTGGCTTTCTTAATCACTCACTGCACCCACATATTATGCACTATGGCAAAGAAGATCCTTCAACAAATTCATTGAAATTTTGTCTATCAAGACCATGCAGATCTGGAGAAGAATGCTGCTTAAGCTACGGGAACTTCTCCAGCTCTCATTTTATTACATTTTACGGTTTCTTACCTCAAGGAGACAACCCGTATGATATCATTCCTTTAGACATTGATAGTTCTGATGTTGATTCTATTGAGCATAAGCCTGTGTCCAACTGGACAACTCACATGGTGCGTGGTACTTGGCTCTCCAACAATCACCGCATATTCCATTATGGCCTTCCCTCTCCATTATTGGATCATCTTCGGAGATCTCGAAGTTCCGTGCTGCAAACAAAGACACTTTTGCAAGGAAACTTGGAAAGTGAGCTGGAAGTTCTTGGAGATCTTAAAGACATCTTTGATGATATGGTGGACAATATGGGTGATATCGAACTTGATGACAGCGAAAACTACAATTGGGATGAAAAAATGGCTTTGGATTTTAAAAATCTGCAAAGACGAATTGCCCATTCTGTTTCAAATTCATGCAGTTCTGGGGTCAACATGTTGAAGAATGAACTCCAGAAGTGTATGGCTGAGGACATCATGGGCTAA 1644 0.3978 MDTDEECSIVLQLSENDPFFDEKKKLLQCKGFSPKERIFLRHASESHRMNDTVKILLQIARIIQLNELELYFAEDDASVEFYSPRNELEALNSIILVTDKSLSSCTFSHTNILQGLRQTVLDLLSDFGDQKNTKGAIEKHHICEKEEHLIEWGKSLGVKTQLKIAYVEGAGRGMIGGKDLKVGDTAIEIPVSLIISEELVLETDMYRLLKEVDGISSETILLLWSMKEKYNCDSKFKFYFDTLPEKFNTGLSFGIEAITMLDGTLLFEEIMQAREHLHAQYDELVPALCNGFPDIFPPELYTWEKFLWACELWYSNSMKIMFSDGKLRTCLIPLAGFLNHSLHPHIMHYGKEDPSTNSLKFCLSRPCRSGEECCLSYGNFSSSHFITFYGFLPQGDNPYDIIPLDIDSSDVDSIEHKPVSNWTTHMVRGTWLSNNHRIFHYGLPSPLLDHLRRSRSSVLQTKTLLQGNLESELEVLGDLKDIFDDMVDNMGDIELDDSENYNWDEKMALDFKNLQRRIAHSVSNSCSSGVNMLKNELQKCMAEDIMG 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04529 547 Pfam Rubisco LSMT substrate-binding 15 104 IPR015353 -
Vifa4g04529 547 Gene3D - 2 119 IPR036464 -
Vifa4g04529 547 Pfam SET domain 171 378 IPR001214 GO:0005515
Vifa4g04529 547 Gene3D set domain protein methyltransferase, domain 1 142 392 - -
Vifa4g04529 547 CDD SET_LSMT 162 392 - -
Vifa4g04529 547 SUPERFAMILY SET domain 145 399 IPR046341 -
Vifa4g04529 547 FunFam Transcription factor, E2F and DP-related 144 392 - -
Vifa4g04529 547 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 133 487 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vifa4g04529 SET 1.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04529 K19199 - gmx:100778605 912.909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04529 4 1432199550 1432208488 Vifa4g04529 4 1432199550 1432208488 ECH