Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04517 ATGAATATGTTCAAGATGGATGTGTTATCCTCAACACTTCAATTTTCAACTTCACATCTAAGCAGCACAACCACAAGCACAATTGTTGCACTCTGCGTGTTCTTCGCACTCCTTTGCGCTTGCATCATCATCGGCCATCTTCTCGAAGAGACTCGTTGGGCCAACGAATCCATCACTGCCCTCCTTCTAGGTTTGTGTTCTGGACTTGTGGTGCTGCTGGTGACTAAGTTCCGTAGTATCGATATTCTGACATTCAGTGAAGACTTGTTCTTCATTTACTTGCTTCCACCAATCATCTTCAATGCCGGTTTCAAAATCGAGAAGAAACTGTTCTTCAGGAATTTCAATTATATTCTTCTGTTTGGTGTTCTTGGCACAGTTATTTCATTCTGTCTCATATCTCTTGGTGCATTTCTACTCATTAATAGGACTGGCATAGCTAACCTGGACATCAAAGATATCCTAGCCATTGGTGCCATACTGTCAGCAACAGACTCAGTGTGTACATTACAGGTTCTGAGTCAAGAAGAAACACCTTTGCTTTACGGCATTGTATTCGGCGAGGGAGTAGTAAATGATGCTATGTCTATTGTTCTTTTCAATTCAGTCCAATCACTAAATTTCAGCACCATCAATGCTGTTACAGCTTTGGAATTGTTGGGAACCTTTCTTTACCTCTTCTGCACTAGTACTGTCCTTGGCATTGTAGTTGGACTTTTAAGTGCTTATTTGATTAAAACATTTTACTTTGGAAGGCACTCTACTGATCGCGAAGTTGCACTTATGATGTTGATGGCATATTTTTCGTATATGATAGCTGAGCTTTTGGAACTCAGTGGGATTTTAACTATCTTCGTCTGTGGCATTGTTATGTCACACTACACATGGCACAATGTTACAGAAAACTCGAGGATAACAACAAAGCACTCCTTTGCAACCATCTCATTCATTTCCGAAACCTTTATATTTCTATATGTTGGCATGGATGCTTTGGACATTGACAAATGGAAAACAAGCATAGCCAGCGTAGGAACTTTAATTGCTGTCAGTTCAACATTCATTGCATTGGTTTTGATTGGAAGAGCATCTCTAGTGTTCCCTATCGCAAACATTGCGAATTGCTTCATGACAAGAGAGAATACAAGAATCGAGTTTCGATCTCAGTTTGTAATATGGTGGGCCGGCCTAATGAGAGGTGCAGTGACTATTGCATTGTCTTGCAACCAGTTTTTAATCTCTGAGGTAACATCGACGGAAGACTCTGCATTAATGATCACTTCAACGATAACCCTCGTCTTATTCAGTACTATGGTATTTGGTTCCATAACAAAACCTCTGATCGAGGTTGTTCAGTTAAGGCATTCAAGACAAACCGTTTCGGATTCCAATGATTATCATGATGAGCTGAGATTACTATTCCTTAACGGCGATGATTCCATTAACGAAACCATGGATGAACCACTACAAAGACGAACTAGACTGAGTTTGATGATGCGATATCCTGCTACTACGGTTCACTACTATTGGAAACAATTTGATTATAAGTTCATGAGACCTATATTTGGTGGCAGAGATCTTGTTCCAGTTGTCCCTGGTACACCTCTGGGTGAAGATTAG 1617 0.4038 MNMFKMDVLSSTLQFSTSHLSSTTTSTIVALCVFFALLCACIIIGHLLEETRWANESITALLLGLCSGLVVLLVTKFRSIDILTFSEDLFFIYLLPPIIFNAGFKIEKKLFFRNFNYILLFGVLGTVISFCLISLGAFLLINRTGIANLDIKDILAIGAILSATDSVCTLQVLSQEETPLLYGIVFGEGVVNDAMSIVLFNSVQSLNFSTINAVTALELLGTFLYLFCTSTVLGIVVGLLSAYLIKTFYFGRHSTDREVALMMLMAYFSYMIAELLELSGILTIFVCGIVMSHYTWHNVTENSRITTKHSFATISFISETFIFLYVGMDALDIDKWKTSIASVGTLIAVSSTFIALVLIGRASLVFPIANIANCFMTRENTRIEFRSQFVIWWAGLMRGAVTIALSCNQFLISEVTSTEDSALMITSTITLVLFSTMVFGSITKPLIEVVQLRHSRQTVSDSNDYHDELRLLFLNGDDSINETMDEPLQRRTRLSLMMRYPATTVHYYWKQFDYKFMRPIFGGRDLVPVVPGTPLGED 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04517 538 Gene3D - 150 202 - -
Vifa4g04517 538 PANTHER SODIUM/HYDROGEN EXCHANGER 26 521 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
Vifa4g04517 538 Pfam Sodium/hydrogen exchanger family 33 447 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vifa4g04517 538 NCBIfam sodium/hydrogen exchanger 3 30 467 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vifa4g04517 538 PRINTS Na+/H+ exchanger signature 158 168 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vifa4g04517 538 PRINTS Na+/H+ exchanger signature 89 100 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vifa4g04517 538 PRINTS Na+/H+ exchanger signature 103 117 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vifa4g04517 538 PRINTS Na+/H+ exchanger signature 118 126 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04517 Vifa-Chr4 1430635436 1430638211 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04517 20 534 Antiporters AT3G05030 58.476 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04517 K14724 - vvi:100264772 743.036