Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04507 ATGAATGCGAGCCAGTTCGACGGTAACGCCGCCTTCTCCGGCGGCGGTTTCTCGGTTACTCAGACCACTCCGAGCGGCGACTCTCCCTTCACTCCCTCCAAGAATCGCGATGCTCAGGCTTTGCTTCCTCTGACGATCAAGCAGATCAACGATGCTTATCAAGCAAGTGATGATAAAACCAATCTGACTATTGATGGTGTTGAAGTTGGCACAATTTCTCTTCTTGGTAGGGTGTGCAGCAAAGCTGGACAAATCACTGATGTTAAATTTGTACTTGATGATGGTACTGGAATGATTGAGTGCACTAAATGGCTTCAAGAACCTGCAGATTCAATTCAAGTGGAGAGTATTTTAAATGGAATGTATGTGCGGGTTTATGGACACTTGAAAGGCTTTCAGGGTAAAAAAAACTTGAATGTTTTCTCTTTTAGGCCTGTGACTGACTTCAACGAGATTGCCCACCATTTCATTGACTGCATATATGTTCATCTATATAATTCGAAGTTTCGGGCTAGCAATCCCAATCAGCAACATGTTCCTAATTCCACACAAATCACTCCCACGAGAGGTCATCAATTTCAAGCTGTATCAGCAAATCAATTCTCAGGTCAAAATAATAATGGTCAGAAGAGTGTTGAACAATTGGTGTCAGATTTCTTGCTTCTTCCCCAAAACAGGGAAATGACTGAGGGAACCCCTCGTGATGTTATTAGAGAACATCTTGGAATTCACCCGGATAGACTCAAGCTGGCTATTGAAAATCTTATCTATGAAGGTCAGATATATGAAGGTGTAACTGATAGATATAAGTCAGCTATCGATGGTTGA 828 0.4239 MNASQFDGNAAFSGGGFSVTQTTPSGDSPFTPSKNRDAQALLPLTIKQINDAYQASDDKTNLTIDGVEVGTISLLGRVCSKAGQITDVKFVLDDGTGMIECTKWLQEPADSIQVESILNGMYVRVYGHLKGFQGKKNLNVFSFRPVTDFNEIAHHFIDCIYVHLYNSKFRASNPNQQHVPNSTQITPTRGHQFQAVSANQFSGQNNNGQKSVEQLVSDFLLLPQNREMTEGTPRDVIREHLGIHPDRLKLAIENLIYEGQIYEGVTDRYKSAIDG 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04507 275 FunFam replication protein A 32 kDa subunit A-like 34 168 - -
Vifa4g04507 275 Gene3D - 33 168 IPR012340 -
Vifa4g04507 275 MobiDBLite consensus disorder prediction 15 34 - -
Vifa4g04507 275 Pfam Replication protein A C terminal 163 265 IPR014892 -
Vifa4g04507 275 SUPERFAMILY Nucleic acid-binding proteins 41 167 IPR012340 -
Vifa4g04507 275 CDD RPA2_DBD_D 71 164 - -
Vifa4g04507 275 PIRSF RPA32 2 273 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vifa4g04507 275 PANTHER REPLICATION PROTEIN A-RELATED 5 271 IPR040260 -
Vifa4g04507 275 Pfam OB-fold nucleic acid binding domain 76 143 IPR004365 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04507 Vifa-Chr4 1427478551 1427484377 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04507 1 225 Core DNA Replication Machinery Family AT3G02920 43.723 2.53e-67 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04507 K10739 - gmx:100782819 343.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04507 4 1427478551 1427484377 Vifa4g04507 4 1427478551 1427484377 ECH