Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04506 ATGAATGCGAGCCAGTTCGACGGTAACGCCGCCTTCTCCGGCGGCGGTTTCTCGGTTACTCAGACCACTCCGAGCGGCGACTCTCCCTTCACTCCCTCCAAGAATCGCGATGCTCAGGCTTTGCTTCCTCTGACGATCAAGCAGATCAACGATGCTTATCAAGCAAGTGATGATAAAACCAATCTGACTATTGATGGTGTTGAAGTTGGCACAATTTCTCTTCTTGGTAGGGTGTGCAGCAAAGCTGGACAAATCACTGATGTTAAATTTGTACTTGATGATGGTACTGGAATGATTGAGTGCACTAAATGGCTTCAAGAACCTGCAGATTCAATTCAAGTGGAGAGTATTTTAAATGGAATGTATGTGCGGGTTTATGGACACTTGAAAGGCTTTCAGGGTAAAAAAAACTTGAATGTTTTCTCTTTTAGGCCTGTGACTGACTTCAACGAGATTGCCCACCATTTCATTGACTGCATATATGTTCATCTATATAATTCGAAGTTTCGGGTACAAGCTAGCAATCCCAATCAGCAACATGTTCCTAATTCCACACAAATCACTCCCACGAGAGGTCATCAATTTCAAGCTGTATCAGCAAATCAATTCTCAGGTCAAAATAATAATGGTCAGAAGAGTGTTGAACAATTGGTGTCAGATTTCTTGCTTCTTCCCCAAAACAGGGAAATGACTGAGGGAACCCCTCGTGATGTTATTAGAGAACATCTTGGAATTCACCCGGATAGACTCAAGCTGGCTATTGAAAATCTTATCTATGAAGGTCAGATATATGAAGGTGTAACTGATAGATATAAGTCAGCTATCGATGGTTGA 834 0.4233 MNASQFDGNAAFSGGGFSVTQTTPSGDSPFTPSKNRDAQALLPLTIKQINDAYQASDDKTNLTIDGVEVGTISLLGRVCSKAGQITDVKFVLDDGTGMIECTKWLQEPADSIQVESILNGMYVRVYGHLKGFQGKKNLNVFSFRPVTDFNEIAHHFIDCIYVHLYNSKFRVQASNPNQQHVPNSTQITPTRGHQFQAVSANQFSGQNNNGQKSVEQLVSDFLLLPQNREMTEGTPRDVIREHLGIHPDRLKLAIENLIYEGQIYEGVTDRYKSAIDG 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04506 277 PIRSF RPA32 2 275 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vifa4g04506 277 Pfam OB-fold nucleic acid binding domain 76 143 IPR004365 GO:0003676
Vifa4g04506 277 Gene3D - 33 168 IPR012340 -
Vifa4g04506 277 MobiDBLite consensus disorder prediction 15 34 - -
Vifa4g04506 277 SUPERFAMILY Nucleic acid-binding proteins 41 167 IPR012340 -
Vifa4g04506 277 FunFam replication protein A 32 kDa subunit A-like 34 168 - -
Vifa4g04506 277 Pfam Replication protein A C terminal 163 267 IPR014892 -
Vifa4g04506 277 CDD RPA2_DBD_D 71 164 - -
Vifa4g04506 277 PANTHER REPLICATION PROTEIN A-RELATED 5 273 IPR040260 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04506 Vifa-Chr4 1427478551 1427484377 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04506 1 227 Core DNA Replication Machinery Family AT3G02920 43.723 3.05e-67 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04506 K10739 - gmx:100782819 338.191