Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04504 ATGGACTCATCTTCCTCTTCACCCCCCACAACCACTAACAACACCTCCCTAGCTTTCTCTCTTTCCAATCACTTTCCCAACCCTTCACACTCTTCTTCCTCTCACCTCTCTCTCTTCCACTCCTTCACCCCTTATCCTCCCCCAACACCATCTCTCACCCTCAACCCTGTAGGCACATCGCCGGAGCCAACTGACAGAAGAACCACCAACCTCTCCATATTCAGTGGCGCACACAAGCTCGAGAACTTTCTAGGAAACTCCACCGCCACCACATATGCACCGCCACAGGCTTACCATCTTTCCGCCGACATATACGATTCTGAGCTGAAGAAAACAATAGCCGCTTGCTTCCCTCATGGCTATCCAACCGAACCAAACTCCGATCCTCCAAAACCTCCCCCCAAGAAAACCGTCGACACCTTCGGCCAACGCACCTCCATTTACCGCGGCGTCACCCGGCATAGATGGACAGGAAGATATGAAGCTCATTTATGGGACAATAGTTGCAGAAGAGAAGGACAAAGTAGGAAAGGAAGACAAGGTGGATATGATAAGGAAGAGAAAGCAGCTAGAGCTTATGATCTTGCTGCTCTCAAGTACTGGGGTCCAACTACCACTACCAACTTTCCAATTTCCAATTATGAGAAAGAGCTTGATGGCATGAAGAACATGACTAGACAAGAGTTTGTTGCTTCTCTAAGAAGGAAGAGTAGTGGCTTTTCAAGAGGAGCATCAATTTATAGAGGAGTAACAAGACACCACCAGCATGGTCGATGGCAGGCAAGGATAGGCCGAGTTGCCGGAAACAAAGACCTCTACCTTGGCACTTTCAGCACACAAGAAGAAGCTGCTGAAGCTTATGATATAGCAGCAATCAAATTCAGAGGACTAAATGCAGTTACAAACTTCGACATGAGTCGCTACGATGTAAAAAGCATCGCAAATAGTTCTCTTCCCATAGGAGGTTTATCGAATAAGAACAACAGATTTTCTACAGATCATTCTTTATCGAAAAGCAAAAGTCTTGAAATCGCAAGTATATCAGATGAAAGAAATCCGTCAACAACCTTCACAATATCGCAACAACCTTCAAGTTCTACCTTAAGCTTCGCGGCTCCTATTAAACAAGATTCTTCTTCAGATTACTGGTCCAATATTCTTGGAATCCATAGTAATAATAATCCTAGTCAAGTTCTTCCATCTTCCGCACCCTTCAACATGGATTTTTCTTCTCATGCAACTTCGAATGCAAACAGCGATAACAATGGAGGTTTTTTCAGTGCATTAGTTGTTCAGCAGCAACAAAATGGAGATAATTCTTCATCTTTATCGTCGTCTTCAACAAGTACAATTCCATTTGCTACACCAATATTTTCTTTAAGTAGTAATAATAGTTATGGAAACAACTGGATTAATAATGGACACACATTCCAAACACATGCAAAGCCAAGTCTGTTTCAAACACCAATATTCGGAATGGAATGA 1485 0.4343 MDSSSSSPPTTTNNTSLAFSLSNHFPNPSHSSSSHLSLFHSFTPYPPPTPSLTLNPVGTSPEPTDRRTTNLSIFSGAHKLENFLGNSTATTYAPPQAYHLSADIYDSELKKTIAACFPHGYPTEPNSDPPKPPPKKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGPTTTTNFPISNYEKELDGMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSSLPIGGLSNKNNRFSTDHSLSKSKSLEIASISDERNPSTTFTISQQPSSSTLSFAAPIKQDSSSDYWSNILGIHSNNNPSQVLPSSAPFNMDFSSHATSNANSDNNGGFFSALVVQQQQNGDNSSSLSSSSTSTIPFATPIFSLSSNNSYGNNWINNGHTFQTHAKPSLFQTPIFGME 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04504 494 SUPERFAMILY DNA-binding domain 245 306 IPR016177 GO:0003677
Vifa4g04504 494 PRINTS Ethylene responsive element binding protein signature 286 306 IPR001471 GO:0003700|GO:0006355
Vifa4g04504 494 PRINTS Ethylene responsive element binding protein signature 148 159 IPR001471 GO:0003700|GO:0006355
Vifa4g04504 494 SMART rav1_2 246 310 IPR001471 GO:0003700|GO:0006355
Vifa4g04504 494 SMART rav1_2 147 216 IPR001471 GO:0003700|GO:0006355
Vifa4g04504 494 FunFam AP2-like ethylene-responsive transcription factor 245 306 - -
Vifa4g04504 494 ProSiteProfiles AP2/ERF domain profile. 147 210 IPR001471 GO:0003700|GO:0006355
Vifa4g04504 494 CDD AP2 146 212 IPR001471 GO:0003700|GO:0006355
Vifa4g04504 494 CDD AP2 245 306 IPR001471 GO:0003700|GO:0006355
Vifa4g04504 494 Gene3D AP2/ERF domain 246 306 IPR036955 GO:0003700|GO:0006355
Vifa4g04504 494 Gene3D AP2/ERF domain 147 212 IPR036955 GO:0003700|GO:0006355
Vifa4g04504 494 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 79 401 - -
Vifa4g04504 494 FunFam AP2-like ethylene-responsive transcription factor ANT 146 212 - -
Vifa4g04504 494 Pfam AP2 domain 147 202 IPR001471 GO:0003700|GO:0006355
Vifa4g04504 494 Pfam AP2 domain 246 296 IPR001471 GO:0003700|GO:0006355
Vifa4g04504 494 SUPERFAMILY DNA-binding domain 146 212 IPR016177 GO:0003677
Vifa4g04504 494 MobiDBLite consensus disorder prediction 1 30 - -
Vifa4g04504 494 ProSiteProfiles AP2/ERF domain profile. 246 304 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04504 Vifa-Chr4 1426428687 1426431465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04504 94 494 AP2-EREBP Transcription Factor Family AT5G57390 55.530 8.25e-143 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Vifa4g04504 AP2 9.3e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04504 K09285 - gmx:100803558 590.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04504 4 1426428687 1426431465 Vifa4g04504 4 1426428687 1426431465 ECH