Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04501 ATGGAGAAGCTCGAGCAAGTCCAATGTTTCGGCCGCAAGAAGAACGCGGTCGCCGTCACCTACTGCAAACGCGGCCGTGGATTGATCAAGATCAACGGCGCCCCCATCGAGTTGGTCGAGCCAGAGATCCTTCGCTTCAAGGCCTTCGAACCAATCCTCTTGTTGGGGAAGAGCCGATTCGCCGGAGTGGACATGCGCATCCGTGTTAAGGGAGGTGGTCACACCTCTCAGATTTACGCCATCAGGCAGAGCATTGCTAAGGCGCTTGTTGCTTTCTATCAGAAGTATGTGGATGAGCAGAGCAAAAAGGAGATCAAGGATCTCCTTTGTACTTATGATAGGACTTTGCTTGTGGCTGATCCTAGGCGTTGTGAGCCCAAGAAGTTTGGTGGACGTGGCGCTCGTGCAAGGTTCCAGAAATCTTACCGTTAA 432 0.5255 MEKLEQVQCFGRKKNAVAVTYCKRGRGLIKINGAPIELVEPEILRFKAFEPILLLGKSRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDLLCTYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04501 143 FunFam 40S ribosomal protein S16 1 143 - -
Vifa4g04501 143 ProSitePatterns Ribosomal protein S9 signature. 71 89 IPR020574 GO:0003735|GO:0005840|GO:0006412
Vifa4g04501 143 Gene3D - 1 143 IPR014721 -
Vifa4g04501 143 PANTHER RIBOSOMAL PROTEIN S9 4 140 IPR000754 GO:0003735|GO:0005840|GO:0006412
Vifa4g04501 143 SUPERFAMILY Ribosomal protein S5 domain 2-like 6 143 IPR020568 -
Vifa4g04501 143 Pfam Ribosomal protein S9/S16 11 143 IPR000754 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04501 Vifa-Chr4 1424123700 1424124131 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04501 5 143 Cytoplasmic Ribosomal Protein Gene Family AT2G09990 86.331 9.77e-88 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04501 K02960 - gmx:100779794 270.781