Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04485 ATGGCTGCGAATTCTTCGTTCGAAGGTATTGCTCTTGATCCTTCTAAATGTAATAAATTGAGTATGGAGGAAAAAAGAGCGCTTGTATATGAAATATCTAATGACGGTGCATCCGAGATGCTGCAGTCATGGAGTCGTCAAGAGATTTTGCAAATCTTGTGTGTTGAGATGGGAAAAGAAAGGAAGTATACTGGGCTGACAAAGTTGAAAATTATCGAAAATCTTCTGAAAATTGTTTCTGAAAAGAAATCAGGCGGCTATGATATTGCCACAGACCCTGAACCACATTCTTTTCCTGCAACTGGCCAGAAGCCTGCTAAAAGGCAGAGAAAAACTGAGAATCCATCTCGATTGGCTGCTCCTGATAACAATGTTACAGCCAATAATGGTGGTGGTGTGAGTAATAATACCCCATACTGCAAAAACTCAGCATGCAAGGCTACCCTAAATCAAGGAGATGCGTTTTGTAAGAGATGTTCATGTTGTATTTGTCATCAATATGATGACAACAAAGACCCTAGCCTGTGGCTAATATGCAGCTCTGAAGCTCCATTTCCTGGTGTTTCCTGTGGCTTGTCATGTCACCTTGAGTGTGCTTTAAAACATGATGGTTCTGGAATTGGCAAAGATGGCCAACGCACCAAACTTGATGGAAACTTTTACTGCATCTCTTGTGGGAAAGTAAATGACTTACTCGGATGCTGGAGAAAACAACTTATGGTAGCAAAGGATGCTAGACGTGTGGACATACTCTGTTATCGTGTCTCCTTAAGCCAGAAACTTTTACAAGGGACAGAAATGTATCTAGAACTTTATAAAATTGTTGATGAAGCAGTGAAGAAACTTGAACCTGAAGTGGGTCCACTGACTGGCTCGCCGTTTAAGATTGGTAGGGGGATTGTGAACAGGCTTTCTTCAGGACCCGAGGTTCAGAGACTCTGCGGTGTTGCTCTTGAATCACTTGATTCAATGCTTTCTAGAATGATCTTGCCTTCATTACCCAATCCAACTATTCAAGATGCAAGTTTGCTAGCTCCAAATATGGTGAAGTTTGAAGATGTCACTGCAACATCCCTCACTGTTCTTTTGTGTTTGGAAGATTCTTCTGGAGAAAATAATGCTGGTTACACCATGTGGCATCGTAAAGCTGATGATGTGAACTATCCATTGGACCCGACTTGCACTAGTCTCCTACCAAATAGAAAGCTCAGCATCAGGGAACTACTTCCAGCTACAGAATACAGTTTTAAATTTGTTTCCAATGATTTGAGGAAGTCACTTATGTGCGAAGTTCAAGTCTCAACGGAGCATGGTGAGGATGAAGTCCCAAATTGCTCAGCAACGGAAAGAAGTCAGAGTCCAGTAACCAACTGTAGCAGCCTTTCCAATCCATCATCTGTGGAAGATGAAACTAATCATAGTGATCAGACAGATAATAGATCAGATAATTATCCTTCTTATAACAAGGATAGTGACCAGCTTGCTTCTGGAAATCTATCAAATGATGTTATTAATTGTTCCAACTTGGGTGGAGTGGGACTTCCCACCGATACAGATTCCTTGTCAGACAAGCAAGGTGCTGTGGGAAAGGCCAACACAATACCTAGTTCTGATGTACTAAAGCTTGAAAACAAGCATTCACAAGAGGAACAAGTAAATGAGGATATGAGCACTGATGATGGGTCAGTTCCAACGGGAAGGGAATGTGTGCCGATAGTAGGTTGCTCAGAAGGGAGCTTGCCTAATACTCCCAGCAGGTTGGAAATACTTAAAGATGGTCTAGGAAAAAAAGGTAGATCCAAATTCAGTGGCAAAGATCTAGAAAAAGGACCTGGGAAAAGGGGTGGCCCTCGAGATGGAAGCAAACCCAAGAAAAGAAGTGGTGAAAGGAAAAATGAGGGCTGCGAGGCTAATGGTTTTCCAGAACGGGATCTTGAGTATTATGTGAAGGTGATTAGATGGTTAGAGTGTGAAGGACACATTGAAAAGAACTTCAGGCAGAAATTTCTGACTTGGTACAGCTTAAGAGCAACCCCTGAAGAAATAAGGATTGTGAAAATATATGTAGATACATTTCTTGAAGATCCAGCTTCTCTTGCAGAGCAACTTGTGGACACCTTCTCAGAATGCATGTCAAACAAGAGATCATCCGTACCTGCAGGGTTCTGCATGAAGCTTTGGCATTGA 2187 0.4193 MAANSSFEGIALDPSKCNKLSMEEKRALVYEISNDGASEMLQSWSRQEILQILCVEMGKERKYTGLTKLKIIENLLKIVSEKKSGGYDIATDPEPHSFPATGQKPAKRQRKTENPSRLAAPDNNVTANNGGGVSNNTPYCKNSACKATLNQGDAFCKRCSCCICHQYDDNKDPSLWLICSSEAPFPGVSCGLSCHLECALKHDGSGIGKDGQRTKLDGNFYCISCGKVNDLLGCWRKQLMVAKDARRVDILCYRVSLSQKLLQGTEMYLELYKIVDEAVKKLEPEVGPLTGSPFKIGRGIVNRLSSGPEVQRLCGVALESLDSMLSRMILPSLPNPTIQDASLLAPNMVKFEDVTATSLTVLLCLEDSSGENNAGYTMWHRKADDVNYPLDPTCTSLLPNRKLSIRELLPATEYSFKFVSNDLRKSLMCEVQVSTEHGEDEVPNCSATERSQSPVTNCSSLSNPSSVEDETNHSDQTDNRSDNYPSYNKDSDQLASGNLSNDVINCSNLGGVGLPTDTDSLSDKQGAVGKANTIPSSDVLKLENKHSQEEQVNEDMSTDDGSVPTGRECVPIVGCSEGSLPNTPSRLEILKDGLGKKGRSKFSGKDLEKGPGKRGGPRDGSKPKKRSGERKNEGCEANGFPERDLEYYVKVIRWLECEGHIEKNFRQKFLTWYSLRATPEEIRIVKIYVDTFLEDPASLAEQLVDTFSECMSNKRSSVPAGFCMKLWH 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04485 728 MobiDBLite consensus disorder prediction 435 499 - -
Vifa4g04485 728 MobiDBLite consensus disorder prediction 116 130 - -
Vifa4g04485 728 Pfam PHD - plant homeodomain finger protein 140 259 IPR032881 -
Vifa4g04485 728 MobiDBLite consensus disorder prediction 439 470 - -
Vifa4g04485 728 CDD PHD_VIN3_plant 160 225 - -
Vifa4g04485 728 MobiDBLite consensus disorder prediction 517 567 - -
Vifa4g04485 728 MobiDBLite consensus disorder prediction 517 541 - -
Vifa4g04485 728 PANTHER VIN3-LIKE PROTEIN 2-RELATED 10 728 IPR044514 GO:0010048|GO:0040029
Vifa4g04485 728 MobiDBLite consensus disorder prediction 478 499 - -
Vifa4g04485 728 MobiDBLite consensus disorder prediction 87 130 - -
Vifa4g04485 728 MobiDBLite consensus disorder prediction 595 636 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04485 Vifa-Chr4 1418304344 1418309608 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04485 4 606 PHD Gene Family AT4G30200 45.581 3.97e-152 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04485 - - gmx:100819331 1193.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04485 4 1418304344 1418309608 Vifa4g04485 4 1418304344 1418309608 ECH