Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04482 ATGAGGTATATTAGGACAAACAGTTTCAAGAGACTCTTCTCATTCAAAAAACGTTCTTTAGAGGTAGAAAAAGATAACACCTTGAAGATTCTTCCATATGAAGAACATTTTCAAAAACCCACTTGGAAATGTTTCTCTTATGAAGAATTATTTGATGCCACCAATGGCTTCAACCCAGAAAACATTGTTGGAAAAGGAGGTTATGCAGAAGTTTACAAAGGAACATTGAAAAATGGTGAAGAAATTGCTGTGAAAAGATTAACAAGAACTTCAAGAGATGAAAGAAAAGAGAAAGAGTTTTTGACAGAGATTGGAACAATAGGACATGTTCGTCATTCAAATGTCTTGTCTTTACTAGGATGTTGTATTGACAATGGACTTTACTTTGTTTTTGAGTTATCCACAACAGGTTCTGTTTCATCTATTCTTCATGATGAAAAGTTGGAACCTTTAGATTGGAAAACAAGGTGTAAGATAGTTCTTGGGACGGCGCGTGGACTTCACTACCTACATAAGGGTTGCAAGAGGAGAATAATTCATAGAGATATCAAAGCATCAAACATTTTGTTGACTAAAGATTTTGAACCACAGATATCTGATTTTGGATTAGCAAAATGGCTTCCATCTCAATGGACTCATCATTCAATTGTTCCAATAGAAGGGACATTTGGACATTTGGCACCAGAGTACTATTTGCATGGAGTTGTTGATGAGAAAACAGATGTGTTTGCATTTGGTGTTTTCTTGCTTGAAGTCATTTCTGGTAGGAAACCTGTTGATGGGTCTCACCAAAGTTTACATAGTTGGGCTAAACCAATTTTGAACAAGGATGACCTAGAAGTGCTGGTAGATGCAAGGCTTGAAGGGAGTTATGATGTGAAACAATTAAAGAGATTTGCCTTTGCTGCCTCTCTTTGTATTAGGGCATCTTCCACTTGGCGACCTAACATGACTGAGGTATTGGAAATAATAGAGGAGGGAGAGATTGATAAAGAGAAATGGAAAATGCCAGAGGAAGAAGAAGTACAAGAACATGAGTTTTGGGGGTTTGAGGATTTGGAATATGAATATGATATTTCATTTTCAATGTCTTTAATTGATTCAATTGAAAGTAATTAA 1119 0.3592 MRYIRTNSFKRLFSFKKRSLEVEKDNTLKILPYEEHFQKPTWKCFSYEELFDATNGFNPENIVGKGGYAEVYKGTLKNGEEIAVKRLTRTSRDERKEKEFLTEIGTIGHVRHSNVLSLLGCCIDNGLYFVFELSTTGSVSSILHDEKLEPLDWKTRCKIVLGTARGLHYLHKGCKRRIIHRDIKASNILLTKDFEPQISDFGLAKWLPSQWTHHSIVPIEGTFGHLAPEYYLHGVVDEKTDVFAFGVFLLEVISGRKPVDGSHQSLHSWAKPILNKDDLEVLVDARLEGSYDVKQLKRFAFAASLCIRASSTWRPNMTEVLEIIEEGEIDKEKWKMPEEEEVQEHEFWGFEDLEYEYDISFSMSLIDSIESN 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04482 372 FunFam Putative receptor-like serine/threonine-protein kinase 24 133 - -
Vifa4g04482 372 Pfam Protein tyrosine and serine/threonine kinase 61 264 IPR001245 GO:0004672|GO:0006468
Vifa4g04482 372 ProSitePatterns Protein kinases ATP-binding region signature. 63 85 IPR017441 GO:0005524
Vifa4g04482 372 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
Vifa4g04482 372 SUPERFAMILY Protein kinase-like (PK-like) 37 324 IPR011009 -
Vifa4g04482 372 PANTHER OS08G0249100 PROTEIN 34 352 IPR046958 -
Vifa4g04482 372 SMART serkin_6 57 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04482 372 Gene3D Transferase(Phosphotransferase) domain 1 135 348 - -
Vifa4g04482 372 Gene3D Phosphorylase Kinase; domain 1 31 132 - -
Vifa4g04482 372 FunFam Putative receptor-like serine/threonine-protein kinase 135 349 - -
Vifa4g04482 372 ProSiteProfiles Protein kinase domain profile. 57 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04482 Vifa-Chr4 1416257673 1416261602 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04482 45 333 Trihelix Transcription Factor Family AT4G32710 44.518 2.02e-70 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vifa4g04482 PK_Tyr_Ser-Thr 2.8e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04482 - - gmx:100305398 636.336