Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04475 ATGGCCACCAACAAATCCATCACCCTCGAAGAAATCAAGAACGAGACCGTTGATCTGGAACATATTCCTGTTGAGGAAGTGTTTGAGCAATTGAAATGTACGAAAGAAGGTTTGTCCTCGGAGGAAGGAGCCAATCGGCTTCAAATATTTGGACCAAACAAGCTAGAGGAGAAAAAGGAAAGCAAGCTTCTCAAGTTTCTTGGGTTCATGTGGAATCCTCTGTCATGGGTCATGGAAGCTGCTGCTTTGATGGCAATTGGTCTTGCAAATGGTGACGGAAAGCCTCCGGATTGGCAAGATTTTGTCGGTATTGTTTGCTTGTTGGTGATCAACTCCACCATCAGTTTCATTGAAGAAAACAATGCCGGTAATGCTGCTGCAGCCCTTATGGCTGGTCTTGCTCCTAAGACAAAGGTTCTTAGGGATGGTAAATGGTCTGAGCAGGAAGCTGCAATTTTAGTCCCTGGAGACATCATTAGCATCAAACTAGGTGATATTGTTCCAGCTGATGCTCGTCTTCTTGAAGGTGACCCTTTAAAGATTGATCAGTCTGCTTTGACTGGAGAATCACTTCCTGTGACTAGAAGTCCTGGGCAAGAAGTTTTCTCTGGCTCAACTTGTAAGCAAGGAGAAATTGAAGCTGTTGTCATTGCAACTGGTGTCCACACTTTTTTCGGGAAAGCAGCTCACCTTGTCGACAGTACCAACCAAGTTGGACATTTCCAGAAGCACCGCAAGTACAGAGACGGAATTGACAACCTTTTGGTTCTTTTGATCGGAGGAATTCCTATTGCTATGCCCACTGTGTTGTCTGTAACAATGGCTATTGGTTCACACAGGCTCTCTCAGCAAGGTGCTATTACCAAGCGAATGACTGCTATTGAAGAGATGGCTGGTATGGATGTGCTTTGCAGTGACAAGACTGGTACACTTACACTTAACAAGTTGAGTGTTGACAAGAACTTGATTGAGGTCTTTGAAAAGGGTGTGGACAAGGAACATGTGATGCTTCTTGCTGCAAGGGCTTCCAGGATTGAAAATCAGGATGCAATAGATGCCGCCATTGTTGGAACTCTAGCAGATCCAAAAGAGGCAAGGGCTGGAGTAAGAGAGGTTCATTTCTTACCATTCAACCCCGTTGACAAAAGAACTGCCTTGACTTACATTGATAGCAATGGAAATTGGCACCGTGCAAGCAAAGGTGCTCCGGAGCAGATCATGAATCTGTGTAACCTTAGGGAAGACGCGAAGAGGAACATCCATGCTATTATTGACAAGTTTGCAGAGAGAGGTCTTCGTTCTCTTGCTGTTTCTAGACAGGAGGTTCCTGAGAAAACTAAAGAAAGTGCTGGTGGTCCTTGGCAGTTTGTTGGTTTGTTGTCACTGTTTGACCCACCTAGGCATGACAGTGCTGAAACTATTAGAAGAGCTCTTCATCTTGGTGTCAATGTTAAGATGATTACTGGTGATCAACTGGCGATAGCAAAGGAGACCGGGAGGAGACTTGGGATGGGAACTAATATGTACCCATCTGCTACATTGCTTGGTCAAGACAAAGATGCAAGTATTGCTGCTCTTCCAGTTGAAGAGCTGATTGAGAAGGCAGATGGATTTGCTGGGGTATTTCCAGAGCACAAATATGAAATTGTAAAGAAGTTGCAAGAAAGAAAACACATCTGCGGAATGACTGGAGATGGTGTCAACGATGCTCCGGCTTTGAAGAAGGCTGATATTGGAATCGCTGTTGCGGATGCTACGGATGCCGCAAGAGGAGCTTCTGATATTGTATTGACAGAACCTGGATTGAGTGTCATCATCAGTGCAGTCTTAACTAGTAGGGCGATTTTCCAAAGGATGAAAAACTACACGATCTATGCAGTATCTATCACTATCCGTATAGTGTTTGGATTCATGTTCATTGCACTGATCTGGAAATTTGACTTCTCACCTTTCATGGTCTTGATTATTGCCATTCTTAATGATGGAACAATCATGACAATTTCAAAAGATAGAGTGGTTCCATCTCCCTTACCCGATAGCTGGAAACTGAATGAAATATTTGCTACTGGGATTGTTCTTGGAGGTTATTTAGCTCTGATGACTGTAATATTCTTCTGGGCAATTAAAGAAAATCATTTCTTCCCTGACAAATTTGGAGTTAGGCACCTGGGTCATGATGAAATGATGTCTGCTTTGTATCTTCAAGTCAGTATAGTTAGCCAGGCTTTGATATTTGTGACTCGTTCTCGTGGTTGGTCGTTTCTTGAACGCCCTGGAGCCCTATTAGTCATTGCTTTCCTCATTGCTCAGCTGATTGCGACATTAATAGCAGTATATGCCAACTGGGGATTTGCAAAGGTACAAGGAATTGGTTGGGGCTGGGCAGGAGTTATCTGGCTCTACAGTATTGTTTTCTATATTCCACTCGACGTGATGAAGTTTGCCATCCGCTACATATTGAGTGGCAAGGCATGGAACAATCTCCTAGACAACAAGACTGCCTTCACCACCAAGAAAGATTACGGAAAAGAGGAGAGAGAAGCTCAATGGGCACATGCTCAGAGGACTCTACATGGACTTCAACCACCAGAGAGTTCTGGTATTTTCAACGAGAAGAGCAGTTACAGAGAACTCTCTGAGATTGCTGAGCAGGCCAAAAGAAGAGCTGAAGTTGCAAGGCTTCGTGAGCTGCACACACTCAAAGGACATGTCGAGTCAGTGGTGAAGCTAAAAGGTTTGGACATCGATACCATCCAGCAGCACTACACTGTGTGA 2775 0.4418 MATNKSITLEEIKNETVDLEHIPVEEVFEQLKCTKEGLSSEEGANRLQIFGPNKLEEKKESKLLKFLGFMWNPLSWVMEAAALMAIGLANGDGKPPDWQDFVGIVCLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEQEAAILVPGDIISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTRSPGQEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFEKGVDKEHVMLLAARASRIENQDAIDAAIVGTLADPKEARAGVREVHFLPFNPVDKRTALTYIDSNGNWHRASKGAPEQIMNLCNLREDAKRNIHAIIDKFAERGLRSLAVSRQEVPEKTKESAGGPWQFVGLLSLFDPPRHDSAETIRRALHLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSATLLGQDKDASIAALPVEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVVPSPLPDSWKLNEIFATGIVLGGYLALMTVIFFWAIKENHFFPDKFGVRHLGHDEMMSALYLQVSIVSQALIFVTRSRGWSFLERPGALLVIAFLIAQLIATLIAVYANWGFAKVQGIGWGWAGVIWLYSIVFYIPLDVMKFAIRYILSGKAWNNLLDNKTAFTTKKDYGKEEREAQWAHAQRTLHGLQPPESSGIFNEKSSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04475 924 SUPERFAMILY HAD-like 300 610 IPR036412 -
Vifa4g04475 924 FunFam ATPase 4 plasma membrane-type 548 788 - -
Vifa4g04475 924 NCBIfam HAD-IC family P-type ATPase 538 652 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa4g04475 924 NCBIfam HAD-IC family P-type ATPase 104 324 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa4g04475 924 NCBIfam plasma-membrane proton-efflux P-type ATPase 242 779 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vifa4g04475 924 SFLD p-type atpase 286 614 IPR044492 -
Vifa4g04475 924 Gene3D - 873 924 - -
Vifa4g04475 924 Gene3D - 316 463 IPR023299 GO:0000166
Vifa4g04475 924 ProSitePatterns E1-E2 ATPases phosphorylation site. 306 312 IPR018303 -
Vifa4g04475 924 FunFam Plasma membrane ATPase 316 463 - -
Vifa4g04475 924 Coils Coil 875 895 - -
Vifa4g04475 924 Pfam haloacid dehalogenase-like hydrolase 300 577 - -
Vifa4g04475 924 PRINTS P-type cation-transporting ATPase superfamily signature 563 582 - -
Vifa4g04475 924 PRINTS P-type cation-transporting ATPase superfamily signature 480 490 - -
Vifa4g04475 924 PRINTS P-type cation-transporting ATPase superfamily signature 170 184 - -
Vifa4g04475 924 PRINTS P-type cation-transporting ATPase superfamily signature 458 469 - -
Vifa4g04475 924 PRINTS P-type cation-transporting ATPase superfamily signature 586 598 - -
Vifa4g04475 924 PRINTS P-type cation-transporting ATPase superfamily signature 304 318 - -
Vifa4g04475 924 PANTHER CALCIUM-TRANSPORTING ATPASE 20 856 - -
Vifa4g04475 924 SFLD Haloacid Dehalogenase 286 614 - -
Vifa4g04475 924 SUPERFAMILY Calcium ATPase, transmembrane domain M 18 820 IPR023298 -
Vifa4g04475 924 Pfam E1-E2 ATPase 134 238 - -
Vifa4g04475 924 CDD P-type_ATPase_H 37 814 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vifa4g04475 924 SMART Cation_ATPase_N_a_2 18 90 IPR004014 -
Vifa4g04475 924 PRINTS H+-transporting ATPase (proton pump) signature 535 551 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa4g04475 924 PRINTS H+-transporting ATPase (proton pump) signature 733 754 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa4g04475 924 PRINTS H+-transporting ATPase (proton pump) signature 563 579 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa4g04475 924 PRINTS H+-transporting ATPase (proton pump) signature 420 438 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa4g04475 924 PRINTS H+-transporting ATPase (proton pump) signature 594 619 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa4g04475 924 FunFam Plasma membrane ATPase 455 611 - -
Vifa4g04475 924 FunFam Plasma membrane ATPase 135 219 - -
Vifa4g04475 924 Pfam Cation transporter/ATPase, N-terminus 21 84 IPR004014 -
Vifa4g04475 924 Gene3D - 135 219 - -
Vifa4g04475 924 Gene3D - 97 788 - -
Vifa4g04475 924 Gene3D - 301 600 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04475 Vifa-Chr4 1413157119 1413163495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04475 9 924 Primary Pumps ATPases AT5G57350 82.981 0.0 1569
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04475 K01535 - gmx:100816905 1669.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04475 4 1413157119 1413163495 Vifa1g09022 1 1432576516 1432582391 PCT