Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04465 ATGTCATCTTCATCATCAAAAGTAACATTAAAAAGTTGTTACTCCGTGAGACCTAAAGAACCAACATGGAATGGTGTTTTACCATTATCTGAATGGGATCAAATTGGAATCATAACACATGTGCCAACAATTTACTTTTACCACCCTACACAAGACTGGCTTACCTCCCCTACTAAAATATCCCACACTTTAAAAGAGTCGTTAAGCAAAGTTCTTGTGACATTTTATCCATTAGCGGGTCGTTTACAATGGCAAGAAAATGGTCGTTTTGATCTCGAATGCAACTCATCGGGTGTTCAATTCATTGAAGCACAATCTACATTAGCATTATCTGAGTTCAATGATTTTTCACCTTCTTCTGAATATTATCGTTATCTTATCCCGCAGGTTGATTACACGCTTCCAATTCAAGACATTCCTTTGATATTTGTTCAGCTTACGAATTTCAAATGTGGCGGTGTTAGCATTGGTTTGTTAATCTCGCATGCAGTTGCTGATGGACAAAGTGCATTGCATTTTACTTCTGAGTGGGCTCGACTTGCACGTGGCGAAACTATAAAAACCACACCATTTTTTGATAGGAGTGTTGTTTCATTAAAATCGCAATGTTGTAACAGTGTTAATGAATGGGAGTTTAATCAACCTCCATCATTGCTGGGAAATTCAGATGGTGTTGAAGAAACGAAGCGAAAATCAACCGTGGCTATAATAAAAGTGAGTAAGGTGCAACTTGAGAAGTTGAGAAAAACAGCAAATGAGAGTTGGGAAAAACCTAGTAATGGTCGAGGTTTTACAAGGTATGAAATAGTAACCAGTCATGTTTGGAGAAGTGCATGTAAAGCTAGAGGACATAGAAATGACCAACCAACCGTGCTTGGTGTTTGTGTTGATTGGAGGAATCGTGTGGAACCTAATTTACCAAAAGGGTATTTTGGGAATGCAACATTGGATATTATGGCAACTAGTCTTGCGGGTGATTTAATGTCTAAGCCTTTAGGGTATGCTTCGAGTAGGATAAGGGAAGCGATTGAAAAAGTGAATGATGAGTATGTGAGACAAGTGAGTGATTACTTTAAGAAACAAGAAGATTTGACTAAGTTTCAAGATGTTCATGCAATGATAAGGAATGATGATAAAGGACCTTTTTATGGAAACCCTAATTTAGGAGTGGTTAGTTGGTTGACATTGCCTATTTATGGACTTGATTTTGGGTGGGGAAGAGAGATTTATATGGGACCAGGAACACATGAAATTGATGGAGATTCTTTGCTTCTTCCTAGTCATGATCATGATGGATCTTTGTCGGTTGCTATTTGTTTGCAAGAGCTTTATATGGATGCTTTCAAGAAGCATTTTTACGAAGACATTGTTTGA 1374 0.3777 MSSSSSKVTLKSCYSVRPKEPTWNGVLPLSEWDQIGIITHVPTIYFYHPTQDWLTSPTKISHTLKESLSKVLVTFYPLAGRLQWQENGRFDLECNSSGVQFIEAQSTLALSEFNDFSPSSEYYRYLIPQVDYTLPIQDIPLIFVQLTNFKCGGVSIGLLISHAVADGQSALHFTSEWARLARGETIKTTPFFDRSVVSLKSQCCNSVNEWEFNQPPSLLGNSDGVEETKRKSTVAIIKVSKVQLEKLRKTANESWEKPSNGRGFTRYEIVTSHVWRSACKARGHRNDQPTVLGVCVDWRNRVEPNLPKGYFGNATLDIMATSLAGDLMSKPLGYASSRIREAIEKVNDEYVRQVSDYFKKQEDLTKFQDVHAMIRNDDKGPFYGNPNLGVVSWLTLPIYGLDFGWGREIYMGPGTHEIDGDSLLLPSHDHDGSLSVAICLQELYMDAFKKHFYEDIV 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04465 457 FunFam Tryptamine hydroxycinnamoyl transferase 220 453 - -
Vifa4g04465 457 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 16 452 - -
Vifa4g04465 457 Gene3D - 2 213 IPR023213 -
Vifa4g04465 457 SUPERFAMILY CoA-dependent acyltransferases 24 185 - -
Vifa4g04465 457 Gene3D - 221 455 IPR023213 -
Vifa4g04465 457 Pfam Transferase family 7 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04465 Vifa-Chr4 1410755216 1410756589 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04465 7 454 Monolignol Biosynthesis Gene Families AT5G48930 39.294 7.60e-111 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04465 K13065 - gmx:100777007 585.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04465 4 1410755216 1410756589 Vifa4g04465 4 1410755216 1410756589 ECH