Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04458 ATGTCTTCTGAAGAGGAAATGAACAAGGGAGGAAAGAAGTTGCAGAAAAGCTACTTTGATGTTGTGGGTTTATGTTGTTCTTCGGAGGTGCCTATGATTGAGAACATCCTCAAACCACTCGAAGGAGTCAAACAAGTTTCCGTCATCGTACCTTCACGAACAGTCATAGTTGTCCACGACACTCTCCTCATTTCGCAGCTTCAAATTGTTAAGGCATTGAATCAAGCAAGACTAGAGGCTAACATAAGAGTGTATGGAGATGAAAAGCACAAAAAAAGATGGCCAAGTGTATACTCAATGGCTTCTGGTTTGTTGCTTGCACTTTCATTTCTGAAATTTGTGTATCCACCATTCAAATTTCTTGCACTTGGAGCTGTTGCTGCTGGTGTTGTTCCTATTATCTTAAAAGCTTTTGTCTCCATTCGGAATGTTAGAGTTGACATCAATATTCTCGTCATCATTGCAGTTGTTGCCACTATTGCTATGAGAGATTATTTGGAAGCAGGAACCATTGTTTTCCTCTTCTCAATTGCGGACTGGTTAGAGTCAAGAGCTAGCCACAAGGCGAATGCAGTAATGTCGTCGTTGATGAGCATTGCTCCTCAAAAGGCGGTGATAGCAGAAACAGGAGAGGTCGTGGATGTTGATGAGGTGAAAGTCAACACAGTTTTAGCGGTTAAAGCTGGGGAAACTATTCCTATTGATGGAGTTGTTATAGACGGTAACTGTGAAGTTGATGAAAAAACGTTGACAGGTGAATCGTTCCCTGTAGCTAAACTGAAAGACTCGACTGTATGGGCGGGCACAATTAACTTAAACGGTTATATTAGTGTGATGACTACTGCGTTATCCGAAGACTGTGTGGTTGCCAAAATGGCAAAGCTGGTGGAAGAGGCGCAAAACAGCAAAACCAGCACGCAGAGGTTGATTGACAAGTTTGCCAGGTTTTATACGCCGGGTGTTGTAATCATATCAACACTTGTAGCAGTGATTCCGCTCGCATTAAAAGTACATAACGAGAAATACTGGCTTCACTTTGCACTGGTTGTTTTGGTAAGTGCCTGTCCATGTGCACTTATTCTTTCAACACCAGTTGCAACTTTTTGCGCTTATACGGCAGCTGCTACGTCTGGTCTTCTCATCAAAGGGGGTCAATCTCTTGAAACACTGGCAAAAATTAAGATCATGGCTTTTGACAAAACGGGCACCATAACAAAGGGTGAATTTGCGGTTACAAATTTTCAATCTCTTTCAGATGACATTGATTTAAACACATTGCTTTACTGGGCGTCGAGCATTGAGAGCAAGTCAAGCCACCCATTGGCAGAAGCAATTGTTGATCACGGAAGGTCTCTCTCCATTGAACCAAATCCGGAAAAGGTGACAGAATTTGAAAATTTTCCAGGAGAAGGAATCTTTGGAAGAATTGACGGAAAAGTTCTCTACATTGGAAATAAAAAAATCGCTACCAGAGCAGGATCTAAAACAGTTCCGACATTAGAAGGTGAAGGTGATGGAGGAAAGACCCTTGGCTACATATACTCAGGACCAACCCCGGTTGGAATTTTCTCTCTATCTGATACTTGCCGATCAGGGGTTCAGGAGGCAATAAGGCAGTTGAAGTTGCTGGGAATCAAAACCGCTATGCTAACCGGAGATAGCCAATCAGCTGCAATGCAAGCACAGGAGCAGTTAGGTGGAGCCCTTGAGTTAGTCCATGCAGAACTTTTGCCAGAAGGCAAAGTAAAAATCATCTCTGAATTTAAAAAGGAAGGTCCAACAGCGATGCTTGGAGATGGTTTAAATGACGCACCTGCATTAGCTTCAGCTGATATTGGAATCTCAATGGGGATTTCAGGTTCTGCACTGGCAAGTGAGACCGGCGATATCATTCTTATGTCGAATGACCTTAGGAAAATACCAGAAGCCATTAAGCTCGCCAGAAAATCTCGAAGGAAAGTGATAGAAAATATTATATTATCAGTCATTACTAAGCTTGCGATTCTTGGTTTGGCTATCGCTGGTCACCCAATTGTTTGGGCAGCAGTTCTTGCCGATGTTGGGACATGTCTGTTGGTCATCTTAAACAGCATGTTACTTCTGCCAAGAAGACACAAGCATGGAGGAAAAAGTTGTAAATCGTCCACTCAACATCATGTCCACAAAAATGGATGCGGCAACACTAACGACTGTTCCTCTCATCATCAGCATCAGCATCAGCATCAACATGAGCATGAGCATCAGCAACATCACCATCACCATCACCATGAGCATGAGCATGAGCATGAACATCAGCATCAACATCAACATCACGGCCATAAGCATTGTTGCTCAGACAAGGCTGAGCCCCAAAAGCATGTCTCTAAGTCATGTTCCTCAAAAAGTCCCCCCTGCCCTTCAAATCCAAGTTTAAGTGGAAGTGTTAACCATCTCAAAAACACGGAGAATCATGATGAATTGCATGAATCAGATCACTGTCATCATGGAAGATGTGACAAGAGTCAAGACAAAGTCCAGAAGCATGATATTAAAAACAAGTGTTGTTCAGATTCACAAAACTCGAATCTAAATGCCAGAGATATCGGCACAGCCTCGGTAAAAATTCATGGTCATTGTCAGGGAAACAAGTCCCATGGGACAAAACACTGCCATAACCAAAACATTGGCAAGGTTACTCATGATAGCACTTCACATAGTTCTCCCTGCCATCTCAATTCCTGTGACAAAAAACAAAGCCAACAGTTAAGTGAGCACTGCCACTCGAACCACGGTTGTAAAAATCAGCACGACCATGGAACCATTCATGAGATTCAGCATCAAAAATCAGGTTGTCATTCTGATAACCATGGTTGTGAAAATCAGCACGACCATGGAGCCATTCATGACATTCAGCATCAGAAACCAGGTTGTCATTCTGATAACCATGGTTGTGAAAATCTGCATGACCACGGAACCATTCACGACAACCAGCATCAGAAATCAGGTTGTCATTCTGATGTTAACAAGTATGGGACGAGTGAAATATCCATTGATATCATCGAAGAACATGATGAAACAGCATCGAAGCATGATTCTTCAAGTTTGGCAGAAAAAGAAAAGGATTCCTGCAAAGACTGCTCCAAAACATGTGAGAACTTGCCATGTGAGAAAGAAGTTAGTTCATGTTGCTATAACGAGGGTTGTTCAAAGGAGTCGATCGAATCCTCGATCGCACATGCTTGTATCACCTTGGACAAGAGAGTAGCTGGTGGATGTTGCAAGAGCTACATGAGGGAATGCTGTGGCAAACATGGACACTCAAGGATTGGTAATTTTGTAGGTTTATCAGACATTGTTACAGAATAA 3345 0.4257 MSSEEEMNKGGKKLQKSYFDVVGLCCSSEVPMIENILKPLEGVKQVSVIVPSRTVIVVHDTLLISQLQIVKALNQARLEANIRVYGDEKHKKRWPSVYSMASGLLLALSFLKFVYPPFKFLALGAVAAGVVPIILKAFVSIRNVRVDINILVIIAVVATIAMRDYLEAGTIVFLFSIADWLESRASHKANAVMSSLMSIAPQKAVIAETGEVVDVDEVKVNTVLAVKAGETIPIDGVVIDGNCEVDEKTLTGESFPVAKLKDSTVWAGTINLNGYISVMTTALSEDCVVAKMAKLVEEAQNSKTSTQRLIDKFARFYTPGVVIISTLVAVIPLALKVHNEKYWLHFALVVLVSACPCALILSTPVATFCAYTAAATSGLLIKGGQSLETLAKIKIMAFDKTGTITKGEFAVTNFQSLSDDIDLNTLLYWASSIESKSSHPLAEAIVDHGRSLSIEPNPEKVTEFENFPGEGIFGRIDGKVLYIGNKKIATRAGSKTVPTLEGEGDGGKTLGYIYSGPTPVGIFSLSDTCRSGVQEAIRQLKLLGIKTAMLTGDSQSAAMQAQEQLGGALELVHAELLPEGKVKIISEFKKEGPTAMLGDGLNDAPALASADIGISMGISGSALASETGDIILMSNDLRKIPEAIKLARKSRRKVIENIILSVITKLAILGLAIAGHPIVWAAVLADVGTCLLVILNSMLLLPRRHKHGGKSCKSSTQHHVHKNGCGNTNDCSSHHQHQHQHQHEHEHQQHHHHHHHEHEHEHEHQHQHQHHGHKHCCSDKAEPQKHVSKSCSSKSPPCPSNPSLSGSVNHLKNTENHDELHESDHCHHGRCDKSQDKVQKHDIKNKCCSDSQNSNLNARDIGTASVKIHGHCQGNKSHGTKHCHNQNIGKVTHDSTSHSSPCHLNSCDKKQSQQLSEHCHSNHGCKNQHDHGTIHEIQHQKSGCHSDNHGCENQHDHGAIHDIQHQKPGCHSDNHGCENLHDHGTIHDNQHQKSGCHSDVNKYGTSEISIDIIEEHDETASKHDSSSLAEKEKDSCKDCSKTCENLPCEKEVSSCCYNEGCSKESIESSIAHACITLDKRVAGGCCKSYMRECCGKHGHSRIGNFVGLSDIVTE 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04458 1114 SUPERFAMILY Calcium ATPase, transmembrane domain M 148 391 IPR023298 -
Vifa4g04458 1114 MobiDBLite consensus disorder prediction 727 811 - -
Vifa4g04458 1114 Gene3D - 408 529 IPR023299 GO:0000166
Vifa4g04458 1114 Gene3D - 186 300 - -
Vifa4g04458 1114 Gene3D - 388 648 IPR023214 -
Vifa4g04458 1114 SUPERFAMILY HMA, heavy metal-associated domain 13 81 IPR036163 GO:0046872
Vifa4g04458 1114 MobiDBLite consensus disorder prediction 818 837 - -
Vifa4g04458 1114 FunFam Copper-transporting ATPase 1, putative 186 300 - -
Vifa4g04458 1114 CDD P-type_ATPase_HM 100 699 - -
Vifa4g04458 1114 FunFam Putative cadmium/zinc-transporting ATPase 3 408 529 - -
Vifa4g04458 1114 NCBIfam cadmium family heavy metal-translocating P-type ATPase 148 488 - -
Vifa4g04458 1114 FunFam Putative cadmium/zinc-transporting ATPase 3 11 84 - -
Vifa4g04458 1114 Pfam E1-E2 ATPase 207 375 - -
Vifa4g04458 1114 SFLD C1.7: P-type atpase like 380 649 - -
Vifa4g04458 1114 SFLD p-type atpase 380 649 IPR044492 -
Vifa4g04458 1114 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 11 701 - -
Vifa4g04458 1114 CDD HMA 19 80 IPR006121 GO:0046872
Vifa4g04458 1114 MobiDBLite consensus disorder prediction 788 811 - -
Vifa4g04458 1114 Pfam haloacid dehalogenase-like hydrolase 393 611 - -
Vifa4g04458 1114 ProSiteProfiles Heavy-metal-associated domain profile. 15 81 IPR006121 GO:0046872
Vifa4g04458 1114 PRINTS P-type cation-transporting ATPase superfamily signature 246 260 - -
Vifa4g04458 1114 PRINTS P-type cation-transporting ATPase superfamily signature 521 532 - -
Vifa4g04458 1114 PRINTS P-type cation-transporting ATPase superfamily signature 597 616 - -
Vifa4g04458 1114 PRINTS P-type cation-transporting ATPase superfamily signature 621 633 - -
Vifa4g04458 1114 PRINTS P-type cation-transporting ATPase superfamily signature 397 411 - -
Vifa4g04458 1114 PRINTS P-type cation-transporting ATPase superfamily signature 543 553 - -
Vifa4g04458 1114 MobiDBLite consensus disorder prediction 744 759 - -
Vifa4g04458 1114 NCBIfam heavy metal translocating P-type ATPase 148 700 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vifa4g04458 1114 NCBIfam HAD-IC family P-type ATPase 171 674 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa4g04458 1114 ProSitePatterns E1-E2 ATPases phosphorylation site. 399 405 IPR018303 -
Vifa4g04458 1114 Gene3D - 11 84 - -
Vifa4g04458 1114 SUPERFAMILY Calcium ATPase, transduction domain A 211 296 IPR008250 -
Vifa4g04458 1114 PRINTS H+-transporting ATPase (proton pump) signature 629 654 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa4g04458 1114 PRINTS H+-transporting ATPase (proton pump) signature 597 613 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa4g04458 1114 SUPERFAMILY HAD-like 397 698 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04458 Vifa-Chr4 1409289935 1409296654 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04458 12 720 Primary Pumps ATPases AT4G30110 69.718 0.0 1050
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04458 K01534 - gmx:100817567 1368.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04458 4 1409289935 1409296654 Vifa4g04458 4 1409289935 1409296654 ECH