Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04441 ATGTCTTCTTGTTTGAGTGGAACCGGAGCAAGAACCTACGGGTTAGACTTAGATTTAATTAAATCACCACCATGTTCATGGAGTAGAACATCACAAACATCTTCTTCACCGTCTTCAACAATCTCCGAATCAAGCAATTCGCCACTCGCAATCTACACCACAAAACCTAGAACCTCGAGAAAACGACCCAATCAAACCTACAACGAAGCCGCAACGCTCCTCTCAACTGCTTACCCGATCCTCTTCTCCAATCCCAACCCTAATAACAAATTCCATAAACCGTTATTATCATCGGAAAAAACTTACGAATCCGATTCCTCAGAGCTTCTATTACCTTTCCGAGTATTAAATTCGTCTTCATCTTTTTTACTTCACAAGCAAGTGTTTCCGTCCGAGCCTAAGCCGGTGAAACCATGTCAGAGTCCCGGAGAGATAAGTTCAATGGTGAATTTACTCGAATTGAACGAGGAAGATGATTTCGATGCGGAATCAATTCTCGATGAGGAAATTGAACAAGGCATCGATAGTATCATGGGAGGGAGAATTCCGGAAGATGAATCTAACGCTGGTTCTTCATCTTCTCATCATCCATGGATTGGTTTTGGCGGGAAAATCGATTTCCGTGTCGGTGCTAAAACGCCGCCGCCGGCGACGGAGAAGAAAAAGAAGAAGAAAGTGGTTGTGGTTATGAAACAGAGCGAGGTGTCAAAAGAAACGGAATTGCCGAAGGCGAAAAGTGGTTTGTTGTTGAAATTGAATTACGACGGTGTTCGGAAAGCGTGGTCCGGCCGGGGAACACCGTTCGCCGACGACAGCCCTATTTCCGATGTATCGGGAAACGACGTAAATGCGCGGTTGTCACAAATTGATTTATTGTGGGAAAACGGAGGAGGAGGGGTGAGAGAAGCGAGTGTGCAGCGCTATAAAGAGAAGCGCCGCACGCGTCTCTTCTCTAAGAAAATAAGATATCAAGTTAGGAAAGTCAACGCAGATCAACGGCCAAGAATGAAGGGACGATTTGTTAGGAGGCTGAATGATAGATAG 1044 0.4521 MSSCLSGTGARTYGLDLDLIKSPPCSWSRTSQTSSSPSSTISESSNSPLAIYTTKPRTSRKRPNQTYNEAATLLSTAYPILFSNPNPNNKFHKPLLSSEKTYESDSSELLLPFRVLNSSSSFLLHKQVFPSEPKPVKPCQSPGEISSMVNLLELNEEDDFDAESILDEEIEQGIDSIMGGRIPEDESNAGSSSSHHPWIGFGGKIDFRVGAKTPPPATEKKKKKKVVVVMKQSEVSKETELPKAKSGLLLKLNYDGVRKAWSGRGTPFADDSPISDVSGNDVNARLSQIDLLWENGGGGVREASVQRYKEKRRTRLFSKKIRYQVRKVNADQRPRMKGRFVRRLNDR 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04441 347 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 12 344 - -
Vifa4g04441 347 Pfam CCT motif 301 342 IPR010402 GO:0005515
Vifa4g04441 347 ProSiteProfiles CCT domain profile. 301 343 IPR010402 GO:0005515
Vifa4g04441 347 MobiDBLite consensus disorder prediction 28 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04441 Vifa-Chr4 1403666703 1403668722 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04441 225 343 C2C2-CO-like Transcription Factor Family AT1G68520 42.222 2.65e-23 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa4g04441 CCT 1.2e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04441 - - aprc:113845796 360.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04441 4 1403666703 1403668722 Vifa4g04441 4 1403666703 1403668722 ECH
Vifa4g04441 4 1403666703 1403668722 Vifa1g08921 1 1413565399 1413566271 PCT