Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa4g04427 | ATGGCAAAGAATTCATTGGAGAGGTACACTCATTATTATGAGCGGTGGGCTAGCAACCAATCTTCAAGGCAAAAAGCTCTCTCAGATCTACACCAGATGCAAACTGTTCATATTGAGAAGCTTAGTGATACACAGTGCCAACCTGAGTCACAGCTTAAGTTCATAACTGAGGCTTGGTTACAGATAGTTGAGTGCAGGCGGGTATTAAAGTGGACATATGCATATGGATTCTATTTAGCGGAGCATGAGCATGCGAAAAAGCAGTTCTTTGAGTACTTGCAAGGTGAGGCTGAATCAGGTTTAGAGAGACTTCATCAATGTGCCGAAAAGGAACTCCAAGTATTCCTCAATGGTGATGGCCCATCTAAAGATTTCAATGATTTTCGCACAAAGCTAGCTGGATTGACCAGTGTGACTAGAAACTACTTTGAGAATTTGGTTAGGGAATTAGAGAATGGTTTATGCGATGTGGATAGCAATGGAGCTGCTTCCAGTAAAGCAACGGGTTCAAAAAATGCTGCAGGGAGCAGCAAGGGAAGAGGCGGAAGAGGAAAGGGGACGGTTCGAGCTAGCATGTCCAGCAGAATTACTGATGATAATCATTGGTCTTGTGAGCAATGTACCTATGCGAATGTCAGATCTGCCACTGCATGCCAGATGTGCAACCAACCGCGTCGATGA | 681 | 0.4435 | MAKNSLERYTHYYERWASNQSSRQKALSDLHQMQTVHIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGFYLAEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQVFLNGDGPSKDFNDFRTKLAGLTSVTRNYFENLVRELENGLCDVDSNGAASSKATGSKNAAGSSKGRGGRGKGTVRASMSSRITDDNHWSCEQCTYANVRSATACQMCNQPRR | 226 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa4g04427 | 226 | Gene3D | - | 1 | 157 | - | - | |
| Vifa4g04427 | 226 | Gene3D | - | 196 | 226 | - | - | |
| Vifa4g04427 | 226 | MobiDBLite | consensus disorder prediction | 162 | 194 | - | - | |
| Vifa4g04427 | 226 | ProSitePatterns | Zinc finger RanBP2-type signature. | 202 | 221 | IPR001876 | - | |
| Vifa4g04427 | 226 | Pfam | Ariadne domain | 2 | 155 | IPR045840 | - | |
| Vifa4g04427 | 226 | SUPERFAMILY | Ran binding protein zinc finger-like | 198 | 225 | IPR036443 | - | |
| Vifa4g04427 | 226 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 198 | 226 | IPR001876 | - | |
| Vifa4g04427 | 226 | SMART | zf_4 | 200 | 224 | IPR001876 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vifa4g04427 | Vifa-Chr4 | 1398582770 | 1398585175 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vifa4g04427 | 1 | 225 | ARIADNE family | AT1G65430 | 70.222 | 2.00e-105 | 313 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa4g04427 | K11968 | - | gmx:100793295 | 391.349 |