Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04414 ATGGTTGTAGATCCGGTTATGATTCCGAAGATGAGAATGGAAGAACAGTTTGCTATACAAGAAGCTGCTTCTGCTGGATTGAAAAGCATGGAGCATTTCATCCGAGTGCTTTCTTCTCAAACTTCGTCTTCTTCCTCAAATCAACTTAACCGTTTGGATCTTGATTGCACAGAAATAACTGATTTCACTGTTTCGAAGTTCAAACAGGTTATCAATTTGTTGAATCGTACCGGTCACGCTCGTTTTCGTCGTGCACCTTCACAATCTCAATCGAAACCTGGATCTGAGAAATTAAATCTTCATCATCATCAACAATCACAGTCAACAACTCTTGATTTCGCTAAACCAGTTCAACTAATTATGTCAAATCCAAATCCGAATCTGAAATCTAAACCTAAACCTAATCCATCTACGGATTTATCTGTTTCTCAATACTCTAAATCTAAAGAAGCATACAGTATTTCCACCACTACTTCTTCTTTTCATTCCACTATCACCGTCACCGGAGACGGAAGCGTTTCCGACGGTAAAATAGGTCCATCTATAATCTCATCTGGAAAGCCTCCTCTTGCTTCATCGCATCGGAAAAGGTGTCATGAAGCAACTGTCTCCGGTGCCGCTTCCGGTAAAGTGTCTTCGTCTGGTCACTGCCATTGCTCTAAGAAAAGGAAATCTCGTGTGAAGAGAACAATTCGTGTTCCGGCGATAAGTACGAAGGTCGCTGATATTCCAGCAGACGAATTTTCATGGAGGAAATACGGTCAAAAACCTATTAAAGGTTCACCTTATCCACGTGGTTACTACAAGTGCAGTAGCTTTAAAGGTTGTCCGGCGAGGAAGCATGTGGAAAGGGCACAAGATGATCCCAATATGCTTCTTGTGACCTACGAGGGAGAGCACCGACACTTGCCAACCTTCGGAACCGAAACCGGTGCCGGTGCAAGATTCGGAGCCGGATTCACATCTCAGGTTCACTAA 978 0.4315 MVVDPVMIPKMRMEEQFAIQEAASAGLKSMEHFIRVLSSQTSSSSSNQLNRLDLDCTEITDFTVSKFKQVINLLNRTGHARFRRAPSQSQSKPGSEKLNLHHHQQSQSTTLDFAKPVQLIMSNPNPNLKSKPKPNPSTDLSVSQYSKSKEAYSISTTTSSFHSTITVTGDGSVSDGKIGPSIISSGKPPLASSHRKRCHEATVSGAASGKVSSSGHCHCSKKRKSRVKRTIRVPAISTKVADIPADEFSWRKYGQKPIKGSPYPRGYYKCSSFKGCPARKHVERAQDDPNMLLVTYEGEHRHLPTFGTETGAGARFGAGFTSQVH 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04414 325 SMART WRKY_cls 244 304 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa4g04414 325 MobiDBLite consensus disorder prediction 81 144 - -
Vifa4g04414 325 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 16 306 IPR044810 GO:0003700
Vifa4g04414 325 ProSiteProfiles WRKY domain profile. 239 302 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa4g04414 325 Pfam WRKY DNA -binding domain 246 302 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa4g04414 325 FunFam WRKY transcription factor 65 228 305 - -
Vifa4g04414 325 Pfam Plant zinc cluster domain 195 242 IPR018872 -
Vifa4g04414 325 Gene3D WRKY domain 215 305 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa4g04414 325 SUPERFAMILY WRKY DNA-binding domain 241 302 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa4g04414 325 MobiDBLite consensus disorder prediction 82 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04414 Vifa-Chr4 1394917826 1394919013 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04414 1 302 WRKY Transcription Factor Family AT2G24570 50.606 7.26e-95 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa4g04414 WRKY 3.1e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04414 - - gmx:732589 387.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04414 4 1394917826 1394919013 Vifa4g04414 4 1394917826 1394919013 ECH
Vifa1g07251 1 1121558848 1121559845 Vifa4g04414 4 1394917826 1394919013 PCT