Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04413 ATGATCAAGTTTGGTGCACATGGTAAAACACTGGAACCTCCATTGCTATCTGCAACTAGATCATCTTTTAGACACTGGAACTCCCACGGGTCTAAGGATGCGCTTTCTCATGGTGTAGCAACAATTGGAGAAGTGTCCCCGGCCAACCCTCCTTCATACGGTCCTTTCATAAACCCCAGTCACCCCCCTAAAAGTTCACATTTTTCCATCCAATTCAAGAAGAGGAGTGAATGGAAACCTCCAATTTCTAGCTTTAAAGATATTGCTCCTATTCATTCTACGGAAGCTGCAGTCCCTTCTGTTTTGGCTCAGCCACCGTTGACCCACCATGCTTCCAATTGTTACATTCTTCTTTTGAATGTCTCTCAGAATCCTGATTGGGATAAATTTCTTGAAGAATTAGCTACTCAGCTAGGGTTGCAAAATAATACCCAGATTGACCTGATAAACTTTTATGTGCGCCTAGACCCTGGATTAGTTGGTGGGTACAAACTTCTCAACATAATCTGGTTTGAACCTCCACCTCCGACTCAAGCACCTACTTTAACTGCTTCGCCAGAGAAAGCACCTTTGTATCATTCACCTACGGCTACATTGAGTTCTTCAAATAAGGGAGGGCATTCAAATCTATTTCTCGTTCTTGGAATTGCAATTGGCATGCTCTTCATTGCAATTCCAAGGATAGAGAGTGCTGTTTCTGTTGGGGGTTCTATTCCCCACCCAACCAGTACATTTATTGCTTTTGAAGAACTTAAAGAAGCCACAAACAATTTTGAACCTGCAAGTGTACTTGGAGAAGGAGGGTTTGGTAAGGTTTTTAAAGGTATCTTAAGTGATGGTACTTCTGTTGCAATTAAGAGGCTTACAAATGGAGGGCAACAGGGTGACAAAGACTTTTTGGCCGAGGTTGAAATGCTTAGTCGGTTGCATCATCGTAACCTTGTAAAACTAGTGGGATACTATAGTAATCGTGAGTCATCACAAAATCTACTTTGCTATGAGCTTGTCCCTAATGGAAGCTTGGAGGCTTGGCTTCATGGTCCCATGGGAATAAACTATCCTTTAGATTGGGACACCAGAATGAAGATTGCTCTTGACACTGCAAGAGGACTTTCGTACCTACATGAAGACTCACAACCATGTGCACCTGAAGGCGGAGCTAATTAA 1167 0.4276 MIKFGAHGKTLEPPLLSATRSSFRHWNSHGSKDALSHGVATIGEVSPANPPSYGPFINPSHPPKSSHFSIQFKKRSEWKPPISSFKDIAPIHSTEAAVPSVLAQPPLTHHASNCYILLLNVSQNPDWDKFLEELATQLGLQNNTQIDLINFYVRLDPGLVGGYKLLNIIWFEPPPPTQAPTLTASPEKAPLYHSPTATLSSSNKGGHSNLFLVLGIAIGMLFIAIPRIESAVSVGGSIPHPTSTFIAFEELKEATNNFEPASVLGEGGFGKVFKGILSDGTSVAIKRLTNGGQQGDKDFLAEVEMLSRLHHRNLVKLVGYYSNRESSQNLLCYELVPNGSLEAWLHGPMGINYPLDWDTRMKIALDTARGLSYLHEDSQPCAPEGGAN 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04413 388 PANTHER OS01G0750732 PROTEIN 194 381 - -
Vifa4g04413 388 ProSitePatterns Protein kinases ATP-binding region signature. 264 286 IPR017441 GO:0005524
Vifa4g04413 388 Pfam Protein tyrosine and serine/threonine kinase 262 377 IPR001245 GO:0004672|GO:0006468
Vifa4g04413 388 SMART tyrkin_6 258 388 IPR020635 GO:0004713|GO:0006468
Vifa4g04413 388 FunFam Receptor-like serine/threonine-protein kinase ALE2 239 335 - -
Vifa4g04413 388 SUPERFAMILY Protein kinase-like (PK-like) 240 377 IPR011009 -
Vifa4g04413 388 ProSiteProfiles Protein kinase domain profile. 258 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04413 388 Gene3D Transferase(Phosphotransferase) domain 1 336 382 - -
Vifa4g04413 388 Gene3D Phosphorylase Kinase; domain 1 228 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04413 Vifa-Chr4 1394715401 1394716904 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04413 46 380 Receptor kinase-like Gene Family AT4G02010 50.356 7.24e-127 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vifa4g04413 PK_Tyr_Ser-Thr 1e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04413 - - gmx:100793528 515.768