Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04411 ATGGGAAACTGTTGGAGTCTTCAACCTTCAGGCGATCGTCCACACTCAAATACCGCCGCTGACTCTGTCACTAACAATCAATCAGGGAGACTTCCATTTTCTTTTGGTCCCAGCAACTTAGGATTGATAACAAATGGCAATGGCAATTCCACTTCTCTTGGGCGTAGCAGCAACTCACGAGGAAATAGCAGACTATTTAGTAGTAGTAATAACCACTCAACAGGAAATAATACAAGTACATCCTTTTGGGGCTCTGAGAATAGCCAGATATCTCGAGTAAGAGAAGCCGAGGAGTTTCCTTATGGGCAAATCTTGGATGCTGCAAACTTGAAAGTTTTTACATTGGCAGAACTGAAAGTAGCCACTAGAAATTTTCGTCTAGATACTTTATTAGGAGAGGGTGGGTTTGGTAGAGTATACAAGGGTTTGTTTAAGGAGAGAGCAACGTCAAAAAGAGGCGAGGACTCCACTATTGCCATAAAAAAATTGAATTCTCACAGCTCGCAAGGATTTGCAGAATGGCAGTCAGAGGTGAATTTCTTAGGAAGGCTTTCTCATCCCAACCTTGTAAAGCTGTTGGGATTTGGGCGTGAGGATGGTGAGTTATTTCTGGTGTATGAATTTTTGCACCGTGGCAGCTTGGACAACCACCTATTTGGAAGAGGTTCAAATGTTCGTCCACTTTCATGGGACAGAAGGCTGAAAATTATGATTGGAGTAGCTAGGGGACTAAATTTCCTTCACTCCTTGGAGAAGAAAATTATTTACAGGGATCTCAAACCCTCAAATATACTACTTGACAAGGCATACACAGCCAAGCTGTCAGACTTTGGCTTGGCCAGATCTGTTCCTTCTGATGATCGCACTCATGTATCAACACAGATTGTAGGAACACGTGGCTATGCTGCCCCGGAGTACATTGCCACAGGTCATTTGTATGTGAAAAGTGATGTATATGGATTTGGGATTGTTTTGTTGGAGATTTTAACGGGTAAGCGGATAGGCGAGATAATACGCCTTACCGAGCCAAAGTCCCTACATGATTGGCTCAAATCAAACCTATTAAATAGAGCAAAATCGAGAAGCAACATGGATGCAAAGTTGGAAGGCAAGTATCCACCCAAGTTAGCTTCAAAAGTAGCTGAACTTGCTCTCAAATGCATCCAACGAGATCACAAAGTTAGGCCATCTATGAAGGAAGTCCTTGAAACATTAGAAAGTATTGAAGCAGCCAATGAGAAACCAGCTGATAATATAAAGAGGACTACAAATTCCAGGGCAGTTCAGCTACATGACCAGCCAGATGGTGGTTAA 1314 0.4262 MGNCWSLQPSGDRPHSNTAADSVTNNQSGRLPFSFGPSNLGLITNGNGNSTSLGRSSNSRGNSRLFSSSNNHSTGNNTSTSFWGSENSQISRVREAEEFPYGQILDAANLKVFTLAELKVATRNFRLDTLLGEGGFGRVYKGLFKERATSKRGEDSTIAIKKLNSHSSQGFAEWQSEVNFLGRLSHPNLVKLLGFGREDGELFLVYEFLHRGSLDNHLFGRGSNVRPLSWDRRLKIMIGVARGLNFLHSLEKKIIYRDLKPSNILLDKAYTAKLSDFGLARSVPSDDRTHVSTQIVGTRGYAAPEYIATGHLYVKSDVYGFGIVLLEILTGKRIGEIIRLTEPKSLHDWLKSNLLNRAKSRSNMDAKLEGKYPPKLASKVAELALKCIQRDHKVRPSMKEVLETLESIEAANEKPADNIKRTTNSRAVQLHDQPDGG 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04411 437 PANTHER OS01G0588500 PROTEIN-RELATED 72 409 - -
Vifa4g04411 437 MobiDBLite consensus disorder prediction 46 85 - -
Vifa4g04411 437 CDD STKc_IRAK 131 408 - -
Vifa4g04411 437 MobiDBLite consensus disorder prediction 1 31 - -
Vifa4g04411 437 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 209 418 - -
Vifa4g04411 437 SMART serkin_6 125 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04411 437 ProSitePatterns Protein kinases ATP-binding region signature. 131 162 IPR017441 GO:0005524
Vifa4g04411 437 ProSiteProfiles Protein kinase domain profile. 125 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04411 437 FunFam Serine/threonine-protein kinase BIK1 92 208 - -
Vifa4g04411 437 MobiDBLite consensus disorder prediction 413 437 - -
Vifa4g04411 437 SUPERFAMILY Protein kinase-like (PK-like) 102 405 IPR011009 -
Vifa4g04411 437 Pfam Protein tyrosine and serine/threonine kinase 127 405 IPR001245 GO:0004672|GO:0006468
Vifa4g04411 437 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672|GO:0006468
Vifa4g04411 437 Gene3D Phosphorylase Kinase; domain 1 109 208 - -
Vifa4g04411 437 Gene3D Transferase(Phosphotransferase) domain 1 209 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04411 Vifa-Chr4 1393583514 1393586043 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04411 111 405 Glycoside Hydrolase AT3G07070 42.230 3.10e-78 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vifa4g04411 PK_Tyr_Ser-Thr 4.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04411 - - gmx:100813304 602.053