Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04405 ATGGAAGATGTGAGTGATGAAGAATGCAACACAAGTTTATATCTTGGATTAGGAATCAAAAAGGAAAAGAAGAAACCAAAATTGGTGAATAAACCTTGTTTCGACCTAGCTTTTGAGCTTTGTCCAAAAAATGAATCCGTAAAAGTACACAATTCTCATAACAACAATAACAACAACAAAGGTGAGAGATTCAGTTTGGAGTATTATCCCAATGCAACAACATGCAGCACCGATTCCGATAACAACAACAACAACACCGATCGGAGAAAGAAACTCCGGCTTACAAAAGAGCAATCAACCATGCTTGAAAACACCTTCAAGCTCCATAACACTCTTAATCCGGTGCAGAAAAAAACGCTTGCCGACCAATTGAAATTAAAGACAAGACAAATTGAGGTTTGGTTTCAGAACAGGAGAGCAAGGACGAAGCTGAAGCAGACAGAGATAGATTATGAGTTGTTGAAAAAACAATGTCAAAATCTGAGTGATGAGAATAAAAGATTGAAGAAAGAGTTACAAGAGTTGAAAGTAAGACAATCTCCATTATGCCCTCAGCGTTTGTCAAAACCTGTTTGTTCTTTCTGCGACCAGAAACTGTTGAAGCGCAATGAAGACAACAATAATTAA 627 0.3732 MEDVSDEECNTSLYLGLGIKKEKKKPKLVNKPCFDLAFELCPKNESVKVHNSHNNNNNNKGERFSLEYYPNATTCSTDSDNNNNNTDRRKKLRLTKEQSTMLENTFKLHNTLNPVQKKTLADQLKLKTRQIEVWFQNRRARTKLKQTEIDYELLKKQCQNLSDENKRLKKELQELKVRQSPLCPQRLSKPVCSFCDQKLLKRNEDNNN 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04405 208 Gene3D - 81 150 - -
Vifa4g04405 208 SMART HOX_1 87 149 IPR001356 GO:0003677
Vifa4g04405 208 Pfam Homeodomain 88 143 IPR001356 GO:0003677
Vifa4g04405 208 SUPERFAMILY Homeodomain-like 69 146 IPR009057 -
Vifa4g04405 208 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 12 185 - -
Vifa4g04405 208 Coils Coil 137 178 - -
Vifa4g04405 208 CDD homeodomain 88 146 IPR001356 GO:0003677
Vifa4g04405 208 ProSitePatterns 'Homeobox' domain signature. 120 143 IPR017970 GO:0000981|GO:0006355
Vifa4g04405 208 Pfam Homeobox associated leucine zipper 145 176 IPR003106 GO:0006355|GO:0043565
Vifa4g04405 208 ProSiteProfiles 'Homeobox' domain profile. 85 145 IPR001356 GO:0003677
Vifa4g04405 208 SMART halz 145 190 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04405 Vifa-Chr4 1391591903 1391592837 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04405 73 177 Homeobox Transcription Factor Family AT4G37790 63.551 1.44e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vifa4g04405 Homeodomain 5.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04405 K09338 - gmx:100812222 194.126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04405 4 1391591903 1391592837 Vifa1g08857 1 1402630247 1402632090 PCT