Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa4g04405 | ATGGAAGATGTGAGTGATGAAGAATGCAACACAAGTTTATATCTTGGATTAGGAATCAAAAAGGAAAAGAAGAAACCAAAATTGGTGAATAAACCTTGTTTCGACCTAGCTTTTGAGCTTTGTCCAAAAAATGAATCCGTAAAAGTACACAATTCTCATAACAACAATAACAACAACAAAGGTGAGAGATTCAGTTTGGAGTATTATCCCAATGCAACAACATGCAGCACCGATTCCGATAACAACAACAACAACACCGATCGGAGAAAGAAACTCCGGCTTACAAAAGAGCAATCAACCATGCTTGAAAACACCTTCAAGCTCCATAACACTCTTAATCCGGTGCAGAAAAAAACGCTTGCCGACCAATTGAAATTAAAGACAAGACAAATTGAGGTTTGGTTTCAGAACAGGAGAGCAAGGACGAAGCTGAAGCAGACAGAGATAGATTATGAGTTGTTGAAAAAACAATGTCAAAATCTGAGTGATGAGAATAAAAGATTGAAGAAAGAGTTACAAGAGTTGAAAGTAAGACAATCTCCATTATGCCCTCAGCGTTTGTCAAAACCTGTTTGTTCTTTCTGCGACCAGAAACTGTTGAAGCGCAATGAAGACAACAATAATTAA | 627 | 0.3732 | MEDVSDEECNTSLYLGLGIKKEKKKPKLVNKPCFDLAFELCPKNESVKVHNSHNNNNNNKGERFSLEYYPNATTCSTDSDNNNNNTDRRKKLRLTKEQSTMLENTFKLHNTLNPVQKKTLADQLKLKTRQIEVWFQNRRARTKLKQTEIDYELLKKQCQNLSDENKRLKKELQELKVRQSPLCPQRLSKPVCSFCDQKLLKRNEDNNN | 208 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa4g04405 | 208 | Gene3D | - | 81 | 150 | - | - | |
Vifa4g04405 | 208 | SMART | HOX_1 | 87 | 149 | IPR001356 | GO:0003677 | |
Vifa4g04405 | 208 | Pfam | Homeodomain | 88 | 143 | IPR001356 | GO:0003677 | |
Vifa4g04405 | 208 | SUPERFAMILY | Homeodomain-like | 69 | 146 | IPR009057 | - | |
Vifa4g04405 | 208 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 | 12 | 185 | - | - | |
Vifa4g04405 | 208 | Coils | Coil | 137 | 178 | - | - | |
Vifa4g04405 | 208 | CDD | homeodomain | 88 | 146 | IPR001356 | GO:0003677 | |
Vifa4g04405 | 208 | ProSitePatterns | 'Homeobox' domain signature. | 120 | 143 | IPR017970 | GO:0000981|GO:0006355 | |
Vifa4g04405 | 208 | Pfam | Homeobox associated leucine zipper | 145 | 176 | IPR003106 | GO:0006355|GO:0043565 | |
Vifa4g04405 | 208 | ProSiteProfiles | 'Homeobox' domain profile. | 85 | 145 | IPR001356 | GO:0003677 | |
Vifa4g04405 | 208 | SMART | halz | 145 | 190 | IPR003106 | GO:0006355|GO:0043565 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa4g04405 | Vifa-Chr4 | 1391591903 | 1391592837 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa4g04405 | 73 | 177 | Homeobox Transcription Factor Family | AT4G37790 | 63.551 | 1.44e-39 | 135 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | HB-HD-ZIP | Vifa4g04405 | Homeodomain | 5.6e-15 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa4g04405 | K09338 | - | gmx:100812222 | 194.126 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vifa4g04405 | 4 | 1391591903 | 1391592837 | Vifa1g08857 | 1 | 1402630247 | 1402632090 | PCT |