Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04403 ATGTCTCGAAGATTACTTCAACTCCAAGAAACACCTCCTTCATCTTCATCCTCTTCCTCCTCTCCCTCCTCGCACCCGCGTCATGTCTCGGGAGCTTTGTTCTTTTTACTTGGAGGGATCGTAGTTCTCATCATATTGCTCATTCTTCTCTGTGTATTTTGGAAGCGTATTAAACGTGTCCCGCACGAACTACCAGAGAAGACAGCTTCACCACCTGTTGAGACTCAGAATCATGGACTCATGGAGTTCATCAGTGGAAACCTTAGGACAATAAGCTACTTCGATTTCCAAACATTGAGAAAGGCCACCAAGAATTTTCATCGCAGAAACCTTCTAGGAAGTGGCGGATTTGGCCCGGTATATCAGGGAAAGTTGGTAGATGGAAGACTAGTTGCTTGTAAGAAACTGTCTCTTGATAAATCTCACCAAGGCGAAAGAGAGTTTCTAGCAGAAGTGAGAATGATCACAAGCATCCAGCACAAAAACCTCGTTCGCCTTCTTGGCTGTTGCTCGGATGGACCTCAAAGGATACTTGTTTATGAATACATGAAGAACAGAAGTTTAGACCTCTTTGTTCATGGGAATACCGATGAGTTTCTTACCTGGAGCACTAGATTCCAAATTATTCTTGGAGTAGCGCGGGGATTGCAATACCTTCATGAGGATTCGCATGTAAGAATTGTTCACCGCGATATCAAAGCAAGCAACATTCTTCTTGACGAAAAGTTTCAGCCAAGGATTGGTGATTTTGGACTAGCTAGATTCTTCCCTGAAGACCAAGCTTACCTTAGCACTCAATTTGCCGGAACATTAGGCTATACGGCTCCTGAATATGCAATCAGAGGAGAGTTATCTGAAAAGGCAGACATATATAGTTTTGGAGTTCTCGTGCTTGAAATAATCAGCTGTAGAAAAAACACAGATCTCACTTTACCATCAGAGATGCAGTACCTCCCTGAATATGCATGGAAACTTTATGAGAAGTCAATGGTGATGGATCTTATAGATCCAAAGCTGAGAGAAAAAGGATATGTAGAAAAGGATGTTATGCAAGCATTTCATGTGGCATTTTTGTGTCTTCAGCCACATCCAGATTTGAGACCTGCAATGTCACAGATTGTAGCATTGTTGACATTTAAAATCGATATGGTTACAACACCAATGAGGCCGGCTTTCCTTGATCGAAGGCGCGTAATGGATGATGAGAACCACTCTTGGGAAGTCATATCTGAGGTTTTGCAAACTCCTATGGCTAGTGATTCCATGTTGTAA 1272 0.4245 MSRRLLQLQETPPSSSSSSSSPSSHPRHVSGALFFLLGGIVVLIILLILLCVFWKRIKRVPHELPEKTASPPVETQNHGLMEFISGNLRTISYFDFQTLRKATKNFHRRNLLGSGGFGPVYQGKLVDGRLVACKKLSLDKSHQGEREFLAEVRMITSIQHKNLVRLLGCCSDGPQRILVYEYMKNRSLDLFVHGNTDEFLTWSTRFQIILGVARGLQYLHEDSHVRIVHRDIKASNILLDEKFQPRIGDFGLARFFPEDQAYLSTQFAGTLGYTAPEYAIRGELSEKADIYSFGVLVLEIISCRKNTDLTLPSEMQYLPEYAWKLYEKSMVMDLIDPKLREKGYVEKDVMQAFHVAFLCLQPHPDLRPAMSQIVALLTFKIDMVTTPMRPAFLDRRRVMDDENHSWEVISEVLQTPMASDSML 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04403 423 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 40 402 - -
Vifa4g04403 423 FunFam Cysteine-rich receptor-like protein kinase 10 72 182 - -
Vifa4g04403 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Vifa4g04403 423 ProSiteProfiles Protein kinase domain profile. 106 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04403 423 SMART serkin_6 106 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04403 423 Gene3D Transferase(Phosphotransferase) domain 1 183 386 - -
Vifa4g04403 423 Gene3D Phosphorylase Kinase; domain 1 72 182 - -
Vifa4g04403 423 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 183 387 - -
Vifa4g04403 423 Pfam Protein tyrosine and serine/threonine kinase 109 376 IPR001245 GO:0004672|GO:0006468
Vifa4g04403 423 SUPERFAMILY Protein kinase-like (PK-like) 88 380 IPR011009 -
Vifa4g04403 423 MobiDBLite consensus disorder prediction 1 25 - -
Vifa4g04403 423 CDD STKc_IRAK 112 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04403 Vifa-Chr4 1389998534 1390000380 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04403 5 393 Receptor kinase-like Gene Family AT1G56120 41.688 7.77e-99 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa4g04403 PK_Tyr_Ser-Thr 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04403 - - ccaj:109792436 633.639