Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04400 ATGTATGTTGTGATCCCATTTTCTCCCTCTCTTGATCTCTTATATATTAGTGGACAAAAAGATGAAACAATACCGTTTCAGTTTCATATATACACTCTCCTTGCATATCTAATCTTCCTCCCTCACCCTCTTGTCTATATTTTCTTTGTATGCATCATGTTACCACCACCTTATCACCTTATGCCTCTAGATCTTAATCAAGATCAAAACCATGATCATCTTTCTAGTCCAACTCATCTTGCCTCTTCTTCTTCATTTTCTTCTCCATCATCATCATCTTATCCTAACCTACCAGATCAAGTTCTAGATGAACCGTCTTACTACTTCGAAACAAAGCATGATTATGAAGAGGTTAAGAAGATTACTATTCCATCAAGTGGATCAAGCGCGGAAAACCACGATAGCAGCAGAAGCAAACATAAGCTAACAATTCGCTGGAAGAAAGAAGAAACTAGTACCGATGAAACTCATAATATTCAAGCTGATTACGATCAAGATGGTAATTCAATGAAGTGGATGTCATCAAAGATGAGAATAATGAAAAAGATGATGGCTACTGATCCTCGAACCGGTGAAGCTAAACCAGTTAAGTTTGAAGATCAACAACAACAAGGAACAGATAATAGCAGCAACAATAGCAACAACAATTACTCGACTCATCTCAGCTATAATAGCCCTACTATTAGGGTTTGTTCCGATTGCAACACCACTAAGACACCTCTTTGGAGGAGTGGACCTAGAGGCCCCAAGTCACTTTGCAACGCGTGTGGGATTAGACAAAGGAAGGCGAGACGTGCCATGGCATTGGCTGCAGCGTCTGAAAACGGAACAACAATAGCTGATCATGAGACATGTTCTGCAAAGAGAAAAAAGTTGCAGAAGAAAAAAGAGAATAAGTCCAAAATTGAGTTTGAATGTTCACCACACATGAAAAAGAAACGCAAGCTTGAAGCAACAACACCATCTCAAATTAGTAGAAACAAGTTCATCACTTTCGAGGATCTAAGATTAAGCTTGAACCAGAACCTAGCTGTTCAACAAGTTTTTCCTCAGGATGAGAAGGAAGCTGCGATCCTTCTCATGGCTTTATCTTATGGACTAGTCCATGGTTAA 1113 0.3926 MYVVIPFSPSLDLLYISGQKDETIPFQFHIYTLLAYLIFLPHPLVYIFFVCIMLPPPYHLMPLDLNQDQNHDHLSSPTHLASSSSFSSPSSSSYPNLPDQVLDEPSYYFETKHDYEEVKKITIPSSGSSAENHDSSRSKHKLTIRWKKEETSTDETHNIQADYDQDGNSMKWMSSKMRIMKKMMATDPRTGEAKPVKFEDQQQQGTDNSSNNSNNNYSTHLSYNSPTIRVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMALAAASENGTTIADHETCSAKRKKLQKKKENKSKIEFECSPHMKKKRKLEATTPSQISRNKFITFEDLRLSLNQNLAVQQVFPQDEKEAAILLMALSYGLVHG 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04400 370 ProSitePatterns GATA-type zinc finger domain. 231 256 IPR000679 GO:0006355|GO:0043565
Vifa4g04400 370 SMART GATA_3 225 276 IPR000679 GO:0006355|GO:0043565
Vifa4g04400 370 MobiDBLite consensus disorder prediction 133 161 - -
Vifa4g04400 370 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 224 266 - -
Vifa4g04400 370 CDD ZnF_GATA 230 260 IPR000679 GO:0006355|GO:0043565
Vifa4g04400 370 Gene3D - 224 304 IPR013088 GO:0006355|GO:0008270
Vifa4g04400 370 MobiDBLite consensus disorder prediction 72 96 - -
Vifa4g04400 370 Pfam GATA zinc finger 231 264 IPR000679 GO:0006355|GO:0043565
Vifa4g04400 370 MobiDBLite consensus disorder prediction 186 221 - -
Vifa4g04400 370 MobiDBLite consensus disorder prediction 197 221 - -
Vifa4g04400 370 ProSiteProfiles GATA-type zinc finger domain profile. 229 261 IPR000679 GO:0006355|GO:0043565
Vifa4g04400 370 FunFam GATA transcription factor 21 225 304 - -
Vifa4g04400 370 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 64 370 - -
Vifa4g04400 370 MobiDBLite consensus disorder prediction 122 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04400 Vifa-Chr4 1388991737 1388993073 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04400 138 370 C2C2-Gata Transcription Factor Family AT4G26150 44.488 8.76e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vifa4g04400 GATA 6.4e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04400 - - mtr:25494244 339.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04400 4 1388991737 1388993073 Vifa4g04400 4 1388991737 1388993073 ECH
Vifa4g04400 4 1388991737 1388993073 Vifa1g08840 1 1398917651 1398918759 PCT