Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04396 ATGGGAGTGGTTTTGGCACTGATGTTGCCGCTGTTGAAGCTCTGCATAATCATCACAGGCTTTGTAGTGGCAACCCAAGGATCTAGAGGGCCATTGTCACCTCCTGCATCAGCTCCAACTCCTCAAAAGATGCAAGGGAATATGCCACCATCTGTAGCTCCTGCAGCACAAAAGGCAAGACAATTACATCATGCTCCTCAGCCATTAACTTCATCTCACTCTCCAGCATCGACGTCGAGGAACATAATTACCATTCCTGCTCCTGCATCATCATATATGGTTTCGCCATCCATTTCAAGACCCCGAGATAGAGCAATTCCTCCCTCATTATCACCAACAATTGGTAGAGAAAGACATCATGTTCCTCCTAAAGTATCTCTACCCGGTCCTTCTTCCAAGACACTGCCACACCCACCTCCTAATGAGGATTGTTTATCAACTTTATGCACAGAGCCTTATGTAACTTCTCCTCCCGGAGCACCTTGCAGATGTGTCTGGCCTATTCGAGTGGGTCTTCGCCTTAGGGTATCTCTTTACACCTTCTTCCCTTTGGTCTCGGAGCTGGCTTCTGAGCTTGCCAGTGGGATTTTTATGAAACAAAATCAAGTTACAATTGTGGGAGCCAATGCAGCAAACCAGCAACCTGATAAAACAGTTGTCCTTATTGATTTGGTGCCACTCGGGGAAAAATTCGATAATGCAACAGCCTTTTTGACTTCTTATAGGTTTTGGCATAAAAAGATTGTTATTAACGCCTCCTACTTTGGTGACTATGATGTGTTATATCTGAACTATCCAGGTTTACCTCCTTCTCCTCCTTCACCACCTTTAAGCATTACAATAATAGATGATGGTCCTTATACCACTGATGGCAATAATGGAATGACAATAAAGCCCATTGGAGTTGACATACCGAAGAGAAAGAATAGAGGTGATCTTAGCAGAGGATTTATTGGCATCATTGCTATTTCAGTTTTTGTAGCAGTTGTTTTATGCACTGCTGCTGCATGGTTCATGTTTAAATTCAAAGTTCCTGTTAGTAGTCCGGCATCGACTCTGCCGTGGCTTTCACATCCTTCTCTTACCAAAGTACCAGTTACTGCTACTAGATCATTCATTGGAGATGAAAGGGTTGGTTCTGTTTCCTCATCATTTGAATCTGGCATGGCCGCTTATAATGTGTCTGTTAAGACTTTCAGTATGAATGACATTGAGAAAGCTACTGATACTTTTGATTCTTCAAGAATACTTGGAGAAGGTGGTTTTGGGCTTGTTTACGGTGGTGTCCTTGGAAATGGGACAAAAGTGGCAGTCAAGGTTCTAAAAAAGAGGGAGGATCTTCATGGTAATCATGAATTCTTATCTGAAGTTGAGATGCTTAGTCGTCTTCACCATAGAAATCTGGTCAAGTTGATTGGTATATGTATTGAAGAAGACAGCTTCCGCTGCTTGGTTTATGAACTCATTACAAATGGAAGCTTGGAATCACATTTACATGGAGTTGACAGAGAAAAATGTGCACTTGACTGGCGTGCTAGGATGAAGATAGCTCTTGGTGCAGCTCGTGGTTTAGCTTATCTGCATGAAGATTCAAGTCCATGTGTTATTCATAGGGACTTCAAATCTAGCAACATATTGTTGGAAGATGATTTTACTCCAAAAGTATCTGATTTTGGATTGGCCCGGATCGCTGTCGACGAGGAAAATAGACACATATCAACTCGTGTTGTGGGAACATTCGGTTATGTGGCTCCGGAGTATGCAATGAACGGTCATCTTCATGTCAAGAGTGATGTTTACAGCTATGGCGTTGTTCTTCTAGAGCTTCTTACCGGAAGAAAACCTATAGACATGTCACAAACTCCCGGCCAAGAGAATCTCGTTGCTTGGTCTCGTCAATTTCTCACAAGTAAAGAAGGATTAGAAGCAATAATAGATCCATCTATAGGACTCGACGCGACTTTTGATAGCGTGGCCAAAGTAGCAGCCATTGCTTCAATATGCGTGCAGGCAGTAGTATCGAACCGTCCATTCATGAGTGAAGTTGTTCAGGCTTTAAAACTTGTATGCAGTGAATGTGAAGAAGCAAAAGAAGATGATGATGGTTCTAGCCAAGAGCATGAGGATGTATCTGTTGGTGATATTGAAAATGGTTTGTCAGCATCAGAATTATTCAGTTATTGTGGTGGAGTTGGTAGAATGGAGTATGAAACATATAGAAGAAAATCATATTCAGGTCCTATGGGAAATGGAAGAAGCAAACAATTGTGGCAGATAATGAGAAGACTTTCTGGTGGTAATGTTAGTGAACATGGAACTATATGA 2325 0.4202 MGVVLALMLPLLKLCIIITGFVVATQGSRGPLSPPASAPTPQKMQGNMPPSVAPAAQKARQLHHAPQPLTSSHSPASTSRNIITIPAPASSYMVSPSISRPRDRAIPPSLSPTIGRERHHVPPKVSLPGPSSKTLPHPPPNEDCLSTLCTEPYVTSPPGAPCRCVWPIRVGLRLRVSLYTFFPLVSELASELASGIFMKQNQVTIVGANAANQQPDKTVVLIDLVPLGEKFDNATAFLTSYRFWHKKIVINASYFGDYDVLYLNYPGLPPSPPSPPLSITIIDDGPYTTDGNNGMTIKPIGVDIPKRKNRGDLSRGFIGIIAISVFVAVVLCTAAAWFMFKFKVPVSSPASTLPWLSHPSLTKVPVTATRSFIGDERVGSVSSSFESGMAAYNVSVKTFSMNDIEKATDTFDSSRILGEGGFGLVYGGVLGNGTKVAVKVLKKREDLHGNHEFLSEVEMLSRLHHRNLVKLIGICIEEDSFRCLVYELITNGSLESHLHGVDREKCALDWRARMKIALGAARGLAYLHEDSSPCVIHRDFKSSNILLEDDFTPKVSDFGLARIAVDEENRHISTRVVGTFGYVAPEYAMNGHLHVKSDVYSYGVVLLELLTGRKPIDMSQTPGQENLVAWSRQFLTSKEGLEAIIDPSIGLDATFDSVAKVAAIASICVQAVVSNRPFMSEVVQALKLVCSECEEAKEDDDGSSQEHEDVSVGDIENGLSASELFSYCGGVGRMEYETYRRKSYSGPMGNGRSKQLWQIMRRLSGGNVSEHGTI 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04396 774 MobiDBLite consensus disorder prediction 64 79 - -
Vifa4g04396 774 ProSitePatterns Protein kinases ATP-binding region signature. 417 439 IPR017441 GO:0005524
Vifa4g04396 774 FunFam Receptor-like serine/threonine-protein kinase ALE2 489 705 - -
Vifa4g04396 774 Pfam Protein tyrosine and serine/threonine kinase 414 686 IPR001245 GO:0004672|GO:0006468
Vifa4g04396 774 MobiDBLite consensus disorder prediction 92 138 - -
Vifa4g04396 774 Gene3D Transferase(Phosphotransferase) domain 1 489 714 - -
Vifa4g04396 774 MobiDBLite consensus disorder prediction 27 79 - -
Vifa4g04396 774 SUPERFAMILY Protein kinase-like (PK-like) 392 686 IPR011009 -
Vifa4g04396 774 ProSiteProfiles Protein kinase domain profile. 411 689 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04396 774 PANTHER OS01G0750732 PROTEIN 136 711 - -
Vifa4g04396 774 Gene3D Phosphorylase Kinase; domain 1 383 488 - -
Vifa4g04396 774 ProSitePatterns Serine/Threonine protein kinases active-site signature. 535 547 IPR008271 GO:0004672|GO:0006468
Vifa4g04396 774 CDD STKc_IRAK 417 687 - -
Vifa4g04396 774 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 384 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04396 Vifa-Chr4 1387666312 1387669821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04396 141 773 Receptor kinase-like Gene Family AT5G56890 60.483 0.0 774
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vifa4g04396 PK_Tyr_Ser-Thr 7.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04396 - - psat:127138624 1274.23