Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa4g04395 | ATGGCCCCTAGAATCCTACTCTGCGGCGACGTTTTTGGCCGCCTAAACCAGCTTTTCAAGCGCGTCTCATCGGTGAACAAATCGGCGGGTCCATTCGACGCGCTCTTGTGCGTCGGCCAATTCTTCCCTGACTCACCGGAGCTGCTTGATGACTTCATGTCATACATTGAAGGCGGCTCTCACATTCCCCTCCCAACATACTTCATCGGCGACTATGGAGTCGCCGCCCCTAAGGTTTTGATGGCGGCTACTAAGGATTCCGCCAACCGTGGTTTCAAGATGGATGGTTTCAAGGTTTGCGATAATTTGTATTGGTTGAAAGGCAGTGGCAAGTTCAACCTCTTCGGGTTATCTGTCACCTATTTATCTGGTAGGAAATCGTCGAATGTTCAGCAGTTTGGAACTTTTAGTGAAGATGATGTTGATGCTTTGCGTGCGATAGCCGAGGAACCTGGAGTTGTTGATTTTGGGATTACAAATGGAGCAGCTGCTTCAGACATTCCTTCTGGATTCTCGGAATCTAGCGGCAGCGATTCAATCATATCAGAGTTAGTACAAGAGATTAAACCACGCTATCATATTGCAGGTTCTAAAGGTATATACTATGCCCGCGAACCATATTCCAATGTTGATGCCGTGCACACTACCCGTTTCATTGGGCTTGCATCTGTTGGAAATAAAGATAAGCAGAAATTTATTCATGCAATTTCTCCAACACCTGCATCCACCATGTCTTCAACTGAGATTGCCATGAAAACCACAAATACCACCTTATCACCATACATGTCTACGAAGGAAAACGTTTCTCCTAATGACACCACAAAGAGATCCGCTGACTCTGATTCTCAACATTGGAGATATGATGTTTCGCAAAAACGACAGAAACATGAAGCTGGAGATAAGTTGTGTTTCAAATTTGTATCTTCTGGCTCTTGTCTACGGGGAGACACATGCAATTTCCGACATGACACAGATGCAAGGGAGCACTGTTTGAGAGGTGTTTGTTTTGATTTTTTGAACAAGGGAAAATGTGAAAGGGGACCAGATTGCCGCTTTAGGCACAGCTTGCAGGATGAAGGTGATAAGCATCCTTCCAGGAAGCCTGGATCAGAAAATACAAGGTCTAACAGATCAAGAGAATGCTGGTTTTGCTTGTCAAGCCCCAATGTGGAGTCACATTTAATCATAAGCATCGGGGAAAATTACTATCTAGCTCTTGCTAAAGGTCCACTTGTGGAAGACCATGTGCTGATAGTACCCGTTGAGCATATGCCAAATACTTTGTCTCTGTCTTCTGAATCTGAAGCGGAGCTCTTACGATTTCAGAACAGTCTCAAGAGATGTTTCAAGAACCAAGAAAAGGAAGTCATGTTTTTTGAGTGGGCTTCCATACGTGGCACTCATGCCAATCTTCAGGTCATTCCCATTCCATCTTCCAAAGCAGTTATGATTGAAAAAGCATTCAATTTAGCTGCACAAAAGTTGGGATTTGAATTTGTGGTAAAGAAATTCGATAGCATTTCTGATGGAAGAAAGTTTTTGAAGACACAGACTGATGGGAATTCAAGCTTGTTCTATGCTGAAATCCCAGGAGGCACAATTCTGCTGCACCATGTAGAGGAGAAAGACACGTTTCCCGCCCAATTTGGACGTGAGGTTCTGGCGGGGTTGCTTAATATGGCAGATAATGCAGATTGGAGGAATCGCAAACATAACAAAGATGAAGAGATGAAAATCGTTGAAGATTTTAAGGACCGATTTCAAGAATATGATCCAAACCATTGA | 1785 | 0.4381 | MAPRILLCGDVFGRLNQLFKRVSSVNKSAGPFDALLCVGQFFPDSPELLDDFMSYIEGGSHIPLPTYFIGDYGVAAPKVLMAATKDSANRGFKMDGFKVCDNLYWLKGSGKFNLFGLSVTYLSGRKSSNVQQFGTFSEDDVDALRAIAEEPGVVDFGITNGAAASDIPSGFSESSGSDSIISELVQEIKPRYHIAGSKGIYYAREPYSNVDAVHTTRFIGLASVGNKDKQKFIHAISPTPASTMSSTEIAMKTTNTTLSPYMSTKENVSPNDTTKRSADSDSQHWRYDVSQKRQKHEAGDKLCFKFVSSGSCLRGDTCNFRHDTDAREHCLRGVCFDFLNKGKCERGPDCRFRHSLQDEGDKHPSRKPGSENTRSNRSRECWFCLSSPNVESHLIISIGENYYLALAKGPLVEDHVLIVPVEHMPNTLSLSSESEAELLRFQNSLKRCFKNQEKEVMFFEWASIRGTHANLQVIPIPSSKAVMIEKAFNLAAQKLGFEFVVKKFDSISDGRKFLKTQTDGNSSLFYAEIPGGTILLHHVEEKDTFPAQFGREVLAGLLNMADNADWRNRKHNKDEEMKIVEDFKDRFQEYDPNH | 594 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa4g04395 | 594 | MobiDBLite | consensus disorder prediction | 260 | 292 | - | - | |
| Vifa4g04395 | 594 | MobiDBLite | consensus disorder prediction | 355 | 374 | - | - | |
| Vifa4g04395 | 594 | Gene3D | - | 375 | 496 | IPR036265 | - | |
| Vifa4g04395 | 594 | PANTHER | CWF19, CELL CYCLE CONTROL PROTEIN | 4 | 593 | IPR040194 | - | |
| Vifa4g04395 | 594 | Pfam | Protein similar to CwfJ C-terminus 1 | 373 | 488 | IPR006768 | - | |
| Vifa4g04395 | 594 | ProSiteProfiles | Zinc finger C3H1-type profile. | 297 | 325 | IPR000571 | GO:0046872 | |
| Vifa4g04395 | 594 | CDD | MPP_CWF19_N | 6 | 224 | - | - | |
| Vifa4g04395 | 594 | Gene3D | - | 286 | 358 | - | - | |
| Vifa4g04395 | 594 | MobiDBLite | consensus disorder prediction | 355 | 375 | - | - | |
| Vifa4g04395 | 594 | MobiDBLite | consensus disorder prediction | 260 | 276 | - | - | |
| Vifa4g04395 | 594 | Pfam | Protein similar to CwfJ C-terminus 2 | 514 | 591 | IPR006767 | - | |
| Vifa4g04395 | 594 | FunFam | Zinc finger CCCH domain-containing protein 59 | 358 | 483 | - | - | |
| Vifa4g04395 | 594 | SUPERFAMILY | HIT-like | 377 | 478 | IPR036265 | - | |
| Vifa4g04395 | 594 | SMART | c3hfinal6 | 299 | 324 | IPR000571 | GO:0046872 | |
| Vifa4g04395 | 594 | SMART | c3hfinal6 | 331 | 356 | IPR000571 | GO:0046872 | |
| Vifa4g04395 | 594 | MobiDBLite | consensus disorder prediction | 277 | 292 | - | - | |
| Vifa4g04395 | 594 | ProSiteProfiles | Zinc finger C3H1-type profile. | 334 | 357 | IPR000571 | GO:0046872 | |
| Vifa4g04395 | 594 | SUPERFAMILY | CCCH zinc finger | 300 | 326 | IPR036855 | GO:0046872 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vifa4g04395 | Vifa-Chr4 | 1387659333 | 1387664537 | Dispersed/Tandem |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C3H | Vifa4g04395 | CwfJ_C_1 | 1.1e-39 | CL0265 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa4g04395 | K24939 | - | gmx:100782106 | 1000.73 |