LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa4g04394	ATGGCCCCTAGAATCCTACTCTGCGGCGACGTTTTTGGCCGCCTAAACCAGCTTTTCAAGCGCGTCTCATCGGTGAACAAATCGGCGGGTCCATTCGACGCGCTCTTGTGCGTCGGCCAATTCTTCCCTGACTCACCGGAGCTGCTTGATGACTTCATGTCATACATTGAAGGCGGCTCTCACATTCCCCTCCCAACATACTTCATCGGCGACTATGGAGTCGCCGCCCCTAAGGTTTTGATGGCGGCTACTAAGGATTCCGCCAACCGTGGTTTCAAGATGGATGGTTTCAAGGTTTGCGATAATTTGTATTGGTTGAAAGGCAGTGGCAAGTTCAACCTCTTCGGGTTATCTGTCACCTATTTATCTGGTAGGAAATCGTCGAATGTTCAGCAGTTTGGAACTTTTAGTGAAGATGATGTTGATGCTTTGCGTGCGATAGCCGAGGAACCTGGAGTTGTTGATTTGTTCTTGACTAATGAATGGCCAAGTGGGATTACAAATGGAGCAGCTGCTTCAGACATTCCTTCTGGATTCTCGGAATCTAGCGGCAGCGATTCAATCATATCAGAGTTAGTACAAGAGATTAAACCACGCTATCATATTGCAGGTTCTAAAGGTATATACTATGCCCGCGAACCATATTCCAATGTTGATGCCGTGCACACTACCCGTTTCATTGGGCTTGCATCTGTTGGAAATAAAGATAAGCAGAAATTTATTCATGCAATTTCTCCAACACCTGCATCCACCATGTCTTCAACTGAGATTGCCATGAAAACCACAAATACCACCTTATCACCATACATGTCTACGAAGGAAAACGTTTCTCCTAATGACACCACAAAGAGATCCGCTGACTCTGATTCTCAACATTGGAGATATGATGTTTCGCAAAAACGACAGAAACATGAAGCTGGAGATAAGTTGTGTTTCAAATTTGTATCTTCTGGCTCTTGTCTACGGGGAGACACATGCAATTTCCGACATGACACAGATGCAAGGGAGCACTGTTTGAGAGGTGTTTGTTTTGATTTTTTGAACAAGGGAAAATGTGAAAGGGGACCAGATTGCCGCTTTAGGCACAGCTTGCAGGATGAAGGTGATAAGCATCCTTCCAGGAAGCCTGGATCAGAAAATACAAGGTCTAACAGATCAAGAGAATGCTGGTTTTGCTTGTCAAGCCCCAATGTGGAGTCACATTTAATCATAAGCATCGGGGAAAATTACTATCTAGCTCTTGCTAAAGGTCCACTTGTGGAAGACCATGTGCTGATAGTACCCGTTGAGCATATGCCAAATACTTTGTCTCTGTCTTCTGAATCTGAAGCGGAGCTCTTACGATTTCAGAACAGTCTCAAGAGATGTTTCAAGAACCAAGAAAAGGAAGTCATGTTTTTTGAGTGGGCTTCCATACGTGGCACTCATGCCAATCTTCAGGTCATTCCCATTCCATCTTCCAAAGCAGTTATGATTGAAAAAGCATTCAATTTAGCTGCACAAAAGTTGGGATTTGAATTTGTGGTAAAGAAATTCGATAGCATTTCTGATGGAAGAAAGTTTTTGAAGACACAGACTGATGGGAATTCAAGCTTGTTCTATGCTGAAATCCCAGGAGGCACAATTCTGCTGCACCATGTAGAGGAGAAAGACACGTTTCCCGCCCAATTTGGACGTGAGGTTCTGGCGGGGTTGCTTAATATGGCAGATAATGCAGATTGGAGGAATCGCAAACATAACAAAGATGAAGAGATGAAAATCGTTGAAGATTTTAAGGACCGATTTCAAGAATATGATCCAAACCATTGA	1809	0.4378	MAPRILLCGDVFGRLNQLFKRVSSVNKSAGPFDALLCVGQFFPDSPELLDDFMSYIEGGSHIPLPTYFIGDYGVAAPKVLMAATKDSANRGFKMDGFKVCDNLYWLKGSGKFNLFGLSVTYLSGRKSSNVQQFGTFSEDDVDALRAIAEEPGVVDLFLTNEWPSGITNGAAASDIPSGFSESSGSDSIISELVQEIKPRYHIAGSKGIYYAREPYSNVDAVHTTRFIGLASVGNKDKQKFIHAISPTPASTMSSTEIAMKTTNTTLSPYMSTKENVSPNDTTKRSADSDSQHWRYDVSQKRQKHEAGDKLCFKFVSSGSCLRGDTCNFRHDTDAREHCLRGVCFDFLNKGKCERGPDCRFRHSLQDEGDKHPSRKPGSENTRSNRSRECWFCLSSPNVESHLIISIGENYYLALAKGPLVEDHVLIVPVEHMPNTLSLSSESEAELLRFQNSLKRCFKNQEKEVMFFEWASIRGTHANLQVIPIPSSKAVMIEKAFNLAAQKLGFEFVVKKFDSISDGRKFLKTQTDGNSSLFYAEIPGGTILLHHVEEKDTFPAQFGREVLAGLLNMADNADWRNRKHNKDEEMKIVEDFKDRFQEYDPNH	602

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa4g04394	602	MobiDBLite	consensus disorder prediction	268	300	-	-
	Vifa4g04394	602	MobiDBLite	consensus disorder prediction	363	382	-	-
	Vifa4g04394	602	Gene3D	-	383	504	IPR036265	-
	Vifa4g04394	602	SUPERFAMILY	CCCH zinc finger	308	334	IPR036855	GO:0046872
	Vifa4g04394	602	FunFam	Zinc finger CCCH domain-containing protein 59	366	491	-	-
	Vifa4g04394	602	Gene3D	-	294	367	-	-
	Vifa4g04394	602	Pfam	Protein similar to CwfJ C-terminus 2	522	599	IPR006767	-
	Vifa4g04394	602	SUPERFAMILY	HIT-like	385	486	IPR036265	-
	Vifa4g04394	602	ProSiteProfiles	Zinc finger C3H1-type profile.	342	365	IPR000571	GO:0046872
	Vifa4g04394	602	MobiDBLite	consensus disorder prediction	363	383	-	-
	Vifa4g04394	602	MobiDBLite	consensus disorder prediction	268	284	-	-
	Vifa4g04394	602	Pfam	Protein similar to CwfJ C-terminus 1	381	496	IPR006768	-
	Vifa4g04394	602	PANTHER	CWF19, CELL CYCLE CONTROL PROTEIN	4	601	IPR040194	-
	Vifa4g04394	602	CDD	MPP_CWF19_N	6	232	-	-
	Vifa4g04394	602	SMART	c3hfinal6	339	364	IPR000571	GO:0046872
	Vifa4g04394	602	SMART	c3hfinal6	307	332	IPR000571	GO:0046872
	Vifa4g04394	602	ProSiteProfiles	Zinc finger C3H1-type profile.	305	333	IPR000571	GO:0046872
	Vifa4g04394	602	MobiDBLite	consensus disorder prediction	285	300	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa4g04394	Vifa-Chr4	1387659333	1387664537	Tandem

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C3H	Vifa4g04394		CwfJ_C_1	1.1e-39	CL0265

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa4g04394	K24939		-	gmx:100782106	1028.08