Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04393 ATGGCCCCTAGAATCCTACTCTGCGGCGACGTTTTTGGCCGCCTAAACCAGCTTTTCAAGCGCGTCTCATCGGTGAACAAATCGGCGGGTCCATTCGACGCGCTCTTGTGCGTCGGCCAATTCTTCCCTGACTCACCGGAGCTGCTTGATGACTTCATGTCATACATTGAAGGCGGCTCTCACATTCCCCTCCCAACATACTTCATCGGCGACTATGGAGTCGCCGCCCCTAAGGTTTTGATGGCGGCTACTAAGGATTCCGCCAACCGTGGTTTCAAGATGGATGGTTTCAAGGTTTGCGATAATTTGTATTGGTTGAAAGGCAGTGGCAAGTTCAACCTCTTCGGGTTATCTGTCACCTATTTATCTGGTAGGAAATCGTCGAATGTTCAGCAGTTTGGAACTTTTAGTGAAGATGATGTTGATGCTTTGCGTGCGATAGCCGAGGAACCTGGAGTTGTTGATTTGTTCTTGACTAATGAATGGCCAAGTGGGATTACAAATGGAGCAGCTGCTTCAGACATTCCTTCTGGATTCTCGGAATCTAGCGGCAGCGATTCAATCATATCAGAGTTAGTACAAGAGATTAAACCACGCTATCATATTGCAGGTTCTAAAGGTATATACTATGCCCGCGAACCATATTCCAATGTTGATGCCGTGCACACTACCCGTTTCATTGGGCTTGCATCTGTTGGAAATAAAGATAAGCAGAAATTTATTCATGCAATTTCTCCAACACCTGCATCCACCATGTCTTCAACTGAGATTGCCATGAAAACCACAAATACCACCTTATCACCATACATGTCTACGAAGGAAAACGTTTCTCCTAATGACACCACAAAGAGATCCGCTGACTCTGATTCTCAACATTGGAGATATGATGTTTCGCAAAAACGACAGAAACATGAAGCTGGAGATAAGTTGTGTTTCAAATTTGTATCTTCTGGCTCTTGTCTACGGGGAGACACATGCAATTTCCGACATGACACAGATGCAAGGGAGCACTGTTTGAGAGGTGTTTGTTTTGATTTTTTGAACAAGGGAAAATGTGAAAGGGGACCAGATTGCCGCTTTAGGCACAGCTTGCAGGATGAAGGTGATAAGCATCCTTCCAGGAAGCCTGGATCAGAAAATACAAGATCAAGAGAATGCTGGTTTTGCTTGTCAAGCCCCAATGTGGAGTCACATTTAATCATAAGCATCGGGGAAAATTACTATCTAGCTCTTGCTAAAGGTCCACTTGTGGAAGACCATGTGCTGATAGTACCCGTTGAGCATATGCCAAATACTTTGTCTCTGTCTTCTGAATCTGAAGCGGAGCTCTTACGATTTCAGAACAGTCTCAAGAGATGTTTCAAGAACCAAGAAAAGGAAGTCATGTTTTTTGAGTGGGCTTCCATACGTGGCACTCATGCCAATCTTCAGGTCATTCCCATTCCATCTTCCAAAGCAGTTATGATTGAAAAAGCATTCAATTTAGCTGCACAAAAGTTGGGATTTGAATTTGTGGTAAAGAAATTCGATAGCATTTCTGATGGAAGAAAGTTTTTGAAGACACAGACTGATGGGAATTCAAGCTTGTTCTATGCTGAAATCCCAGGAGGCACAATTCTGCTGCACCATGTAGAGGAGAAAGACACGTTTCCCGCCCAATTTGGACGTGAGGTTCTGGCGGGGTTGCTTAATATGGCAGATAATGCAGATTGGAGGAATCGCAAACATAACAAAGATGAAGAGATGAAAATCGTTGAAGATTTTAAGGACCGATTTCAAGAATATGATCCAAACCATTGA 1800 0.4378 MAPRILLCGDVFGRLNQLFKRVSSVNKSAGPFDALLCVGQFFPDSPELLDDFMSYIEGGSHIPLPTYFIGDYGVAAPKVLMAATKDSANRGFKMDGFKVCDNLYWLKGSGKFNLFGLSVTYLSGRKSSNVQQFGTFSEDDVDALRAIAEEPGVVDLFLTNEWPSGITNGAAASDIPSGFSESSGSDSIISELVQEIKPRYHIAGSKGIYYAREPYSNVDAVHTTRFIGLASVGNKDKQKFIHAISPTPASTMSSTEIAMKTTNTTLSPYMSTKENVSPNDTTKRSADSDSQHWRYDVSQKRQKHEAGDKLCFKFVSSGSCLRGDTCNFRHDTDAREHCLRGVCFDFLNKGKCERGPDCRFRHSLQDEGDKHPSRKPGSENTRSRECWFCLSSPNVESHLIISIGENYYLALAKGPLVEDHVLIVPVEHMPNTLSLSSESEAELLRFQNSLKRCFKNQEKEVMFFEWASIRGTHANLQVIPIPSSKAVMIEKAFNLAAQKLGFEFVVKKFDSISDGRKFLKTQTDGNSSLFYAEIPGGTILLHHVEEKDTFPAQFGREVLAGLLNMADNADWRNRKHNKDEEMKIVEDFKDRFQEYDPNH 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04393 599 SUPERFAMILY CCCH zinc finger 308 334 IPR036855 GO:0046872
Vifa4g04393 599 MobiDBLite consensus disorder prediction 268 293 - -
Vifa4g04393 599 Pfam Protein similar to CwfJ C-terminus 2 519 596 IPR006767 -
Vifa4g04393 599 PANTHER CWF19, CELL CYCLE CONTROL PROTEIN 4 598 IPR040194 -
Vifa4g04393 599 FunFam Zinc finger CCCH domain-containing protein 59 364 488 - -
Vifa4g04393 599 Gene3D - 380 501 IPR036265 -
Vifa4g04393 599 ProSiteProfiles Zinc finger C3H1-type profile. 342 365 IPR000571 GO:0046872
Vifa4g04393 599 MobiDBLite consensus disorder prediction 268 284 - -
Vifa4g04393 599 Gene3D - 294 367 - -
Vifa4g04393 599 CDD MPP_CWF19_N 6 232 - -
Vifa4g04393 599 SMART c3hfinal6 339 364 IPR000571 GO:0046872
Vifa4g04393 599 SMART c3hfinal6 307 332 IPR000571 GO:0046872
Vifa4g04393 599 ProSiteProfiles Zinc finger C3H1-type profile. 305 333 IPR000571 GO:0046872
Vifa4g04393 599 SUPERFAMILY HIT-like 385 482 IPR036265 -
Vifa4g04393 599 Pfam Protein similar to CwfJ C-terminus 1 380 493 IPR006768 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04393 Vifa-Chr4 1387659333 1387664537 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa4g04393 CwfJ_C_1 1.7e-39 CL0265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04393 K24939 - gmx:100782106 1028.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04393 4 1387659333 1387664537 Vifa4g04393 4 1387659333 1387664537 ECH