Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04385 ATGGCGGTGGCTTACGGTGGATGCGACGGTGAAATCGGTGGCGTCAGGTCAAACCTAATCCCATCAGTAAAAGCAGAGTTATTCGATGACAGTGCCGGTTCAACTTCACCTGGCTACGACGACGTTTTAAGCGAAAGAAAAGACTCAGTAGTAACCGAAGAAGAAGGTGCTACAGCTTCTCACGCTATTCACATCAAAGAAGAAGTTGCTGAAGACGACGGTGCTAACGCTTCGTCTTCGATGGAGTTTCCGAAACCGATGGCGGGGTTGCATGAGGTTGGTCCACCGCCGTTTCTTAAGAAGACGTATGAAATGGTGGAGGATCCCGAAACTGACACGATTGTTTCGTGGAGTGATTCTCGTGATAGTTTCATTGTTTGGGATTATCATGAATTCTCCAAAACTCTTCTTCCCAAATATTTTAAGCACAATAATTTCTCTAGCTTCATTCGCCAGCTCAACACCTATGGGTTTAGGAAGATTGATTCAGACCGATGGGAGTTTGCGAATGAAGGATTTCAAGGAGGGAAGAAGCATTTGTTGAAGAATATAAGAAGGAGAAGTAAGTATAACAAACTACATCAAGGAGGTTTCAATTTGATGACACCTGGTGTTGAATCTGAAGTGGAGAAACTGAAAAAGGATCAGAACATGTTGAAATTGGAAATTCTGAAGCTAAGGCAGCAACAAGAGAATTCAAATATCCAACTCACAAATGTTAATGAGCGGGTTCGGCGTGCTGAGATGAAGCAATATCAAATGATATATTTCCTCACCAAAATGGCTAGAAAGCCGGTTTTTATGGATCAGTTAATTCAAAAGATGAAGCGGAAAAAAGAGGTTGATGGTAGTATAGATATGGTTAAAAGGCCTAGATTACTTGGAACACAAGGTACTGGTGTTGATTATAGGTCTCAAGGTCGGGAACAGTTTGATAGTTTGCAAACTGAATTGAATGGACTTTTTACTGAAAATGTGAACATTGGTAGAATGGAAGCACCGGTTTCGGATACATTGGAGGATGGATTCGTTAGCTCTTTACATGAAATGAGGGCTTGTGGTGATTCTAGACAAAATGTGCAAGATGTTTCTTCTGCTTATCATGTTATGTCAGAGAAACTATTGAGTGAAAACTCTGTAGTTGATGAAGAAATGGATGTGAATGACTCTAATATCTATCTTGAGTTAGAGGATTTGATTAGTAAACCAGTGGCTTGGGGTGGATCTGCTAGTGGTTTGGTTGGACAAACCATTTGA 1257 0.4105 MAVAYGGCDGEIGGVRSNLIPSVKAELFDDSAGSTSPGYDDVLSERKDSVVTEEEGATASHAIHIKEEVAEDDGANASSSMEFPKPMAGLHEVGPPPFLKKTYEMVEDPETDTIVSWSDSRDSFIVWDYHEFSKTLLPKYFKHNNFSSFIRQLNTYGFRKIDSDRWEFANEGFQGGKKHLLKNIRRRSKYNKLHQGGFNLMTPGVESEVEKLKKDQNMLKLEILKLRQQQENSNIQLTNVNERVRRAEMKQYQMIYFLTKMARKPVFMDQLIQKMKRKKEVDGSIDMVKRPRLLGTQGTGVDYRSQGREQFDSLQTELNGLFTENVNIGRMEAPVSDTLEDGFVSSLHEMRACGDSRQNVQDVSSAYHVMSEKLLSENSVVDEEMDVNDSNIYLELEDLISKPVAWGGSASGLVGQTI 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04385 418 Pfam HSF-type DNA-binding 98 187 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa4g04385 418 MobiDBLite consensus disorder prediction 41 73 - -
Vifa4g04385 418 MobiDBLite consensus disorder prediction 30 79 - -
Vifa4g04385 418 SUPERFAMILY "Winged helix" DNA-binding domain 94 187 IPR036390 -
Vifa4g04385 418 PRINTS Heat shock factor (HSF) domain signature 136 148 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa4g04385 418 PRINTS Heat shock factor (HSF) domain signature 149 161 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa4g04385 418 PRINTS Heat shock factor (HSF) domain signature 98 121 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa4g04385 418 ProSitePatterns HSF-type DNA-binding domain signature. 137 161 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa4g04385 418 SMART hsfneu3 94 187 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa4g04385 418 FunFam Heat shock transcription factor 1 91 188 - -
Vifa4g04385 418 Coils Coil 209 229 - -
Vifa4g04385 418 Gene3D - 91 188 IPR036388 -
Vifa4g04385 418 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 84 304 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04385 Vifa-Chr4 1384422293 1384423962 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04385 84 327 HSF AT2G26150 50.000 8.79e-80 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vifa4g04385 HSF_DNA-bind 2.9e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04385 K09419 - gmx:100818430 536.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04385 4 1384422293 1384423962 Vifa4g04385 4 1384422293 1384423962 ECH