Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04382 ATGAGAATCTTAAACATGGCGATGTTTATTCGGTACATCGTTATATGGCAGAGTTTTTCTCAACCTTCAAACACACTTCTCCCAAACCAGCCTCTAACAGTTTCTTCAGAATTAACATCATCAAAATCCTCATCTCATGGTGGCTACTATGCTCTCAAAATGCTTCAGCAACCAACTTCTTTAAGTCTTGCACTAACTTACAATCTTCCAGAAAGTTACCAAACTTTTGATGAAAATGAATCATATGCAAACTATTCTTATTGGCAAGGTCCTGATATTTCCAATGTAACCGGAGAAGTTATCGCGGTTTTAGATCAAGCCGGAAGCTTTGGAATTGTATATGGAAATTCATCTGATGGTGCAGTTTATGTTTATAAGAATGATAATGATGATGCAGGTTTAGCTTCTGCAATTCATCAATCTACACCGTTAACCGTTCTTAGGAGACTGACACTCGAAGATAATGGAAATCTGAGGTTATACCGATGGGAAGACGTAAATGGATCGAAACAATGGGTGTCACAGTGGGCTGCAGTTTCAAATCCATGTGATATTGGTGGAATTTGTGGTAATGGAGTATGTAAATTGGATAAAACTAAGACTAATGCTTCTTGCACTTGTTTACCAGGAACTTCTAAACTAGGAAGAGATGGACAATGTTATGAGAATTCATCTCTGGTTGGAAAATGTACTAATGGAAAAAACGAAAACAAGACATCGAGTTTTAGAATTTCGACAGTGCAACAAACTAATTATTATTTTTCTGAATCTTCAATAATAGCTAATTATAGTGAGAGTGATGTTTCTTCTGTATCAAAATGCGGCGATGCATGTTTGTCCGATTGTGATTGTGTTGCTTCTGTTTATGGACTAAATGAAGAAAGACCTTTTTGTTGGGTGTTGAGGAGTTTAAGTTTCGGCGGTTTTGAAGATACGAGCTCTACTTTGTTTGTGAAGGTTCGAGCAAATAGTTCATGGACACCAGAAGGACAAGAGGGAAGGTCTAATAACAGTTCTTCTGATGGAATGGGGAGTGCTAAGGAAAAGGCTGTGATTATTCCAATTGTTCTAGGCATGATAGTTCTCATTATTTTACTCACTATGTTACTGTATTACAGTGTTCATAGAAAAAGAACTTTGAAAAGAGAGATGGAATGTTCATTGGTCTTATCAGGTGCTCCAGTGAATTTTACTTACCGCGCTTTGCAGATCAGGACAAGTAACTTTTCGCAGCTTCTAGGAACAGGTGGATTTGGAAGTGTGTATAAAGGAAGCTTAGGAGATGGTACCTTAGTCGCGGTGAAGAAACTTGATAAGATTTTGCCTCATGGAGAGAAAGAATTTATCACCGAAGTAAACACGATTGGCTCAATGCATCATATGAATTTGGTTCGTTTATGTGGTTTTTGTTCTGAGGGACCTCAGAGGCTTTTAGTTTATGAGTTCATGAAGAATGGTTCATTGGATCAGTGGATCTTCCCTTCGATTCGAGGACCAGATAGATTGCTCGATTGGCAAACTCGTTTTGATATAGCCAAAAATACTGCACAAGGGATTGCATACTTTCATGAGCAGTGTAGAAAAAAGATAATACATTGTGACATCAAGCCAGAAAATATATTGTTAGATGAAAACTTTTGTCCCAAGGTATCTGATTTTGGACTTGCTAAATTGATGGCAAGGGAACATTCTCATGTGGTAACAATGGTAAGAGGCACTAGAGGCTATTTGGCACCAGAATGA 1743 0.3787 MRILNMAMFIRYIVIWQSFSQPSNTLLPNQPLTVSSELTSSKSSSHGGYYALKMLQQPTSLSLALTYNLPESYQTFDENESYANYSYWQGPDISNVTGEVIAVLDQAGSFGIVYGNSSDGAVYVYKNDNDDAGLASAIHQSTPLTVLRRLTLEDNGNLRLYRWEDVNGSKQWVSQWAAVSNPCDIGGICGNGVCKLDKTKTNASCTCLPGTSKLGRDGQCYENSSLVGKCTNGKNENKTSSFRISTVQQTNYYFSESSIIANYSESDVSSVSKCGDACLSDCDCVASVYGLNEERPFCWVLRSLSFGGFEDTSSTLFVKVRANSSWTPEGQEGRSNNSSSDGMGSAKEKAVIIPIVLGMIVLIILLTMLLYYSVHRKRTLKREMECSLVLSGAPVNFTYRALQIRTSNFSQLLGTGGFGSVYKGSLGDGTLVAVKKLDKILPHGEKEFITEVNTIGSMHHMNLVRLCGFCSEGPQRLLVYEFMKNGSLDQWIFPSIRGPDRLLDWQTRFDIAKNTAQGIAYFHEQCRKKIIHCDIKPENILLDENFCPKVSDFGLAKLMAREHSHVVTMVRGTRGYLAPE 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04382 580 SUPERFAMILY Protein kinase-like (PK-like) 387 580 IPR011009 -
Vifa4g04382 580 ProSitePatterns Serine/Threonine protein kinases active-site signature. 530 542 IPR008271 GO:0004672|GO:0006468
Vifa4g04382 580 Gene3D Transferase(Phosphotransferase) domain 1 483 580 - -
Vifa4g04382 580 ProSiteProfiles Protein kinase domain profile. 407 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04382 580 PANTHER OS07G0415500 PROTEIN 14 580 - -
Vifa4g04382 580 SMART serkin_6 407 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04382 580 Pfam S-locus glycoprotein domain 129 210 IPR000858 GO:0048544
Vifa4g04382 580 ProSitePatterns Protein kinases ATP-binding region signature. 413 436 IPR017441 GO:0005524
Vifa4g04382 580 Pfam Protein kinase domain 410 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04382 580 FunFam serine/threonine-protein kinase PBS1-like 375 482 - -
Vifa4g04382 580 Gene3D Phosphorylase Kinase; domain 1 371 482 - -
Vifa4g04382 580 FunFam Protein kinase superfamily protein 483 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04382 Vifa-Chr4 1383332858 1383335129 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04382 353 580 Receptor kinase-like Gene Family AT5G20050 44.082 7.93e-56 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa4g04382 Pkinase 1.5e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04382 - - tpra:123904109 1038.87