Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04368 ATGTTGGGTGACGCCACGAACTGGAACGAAGACTTGTACAGAGAAACCGTATTAAAGGAAAGAGAGATTCAAACCCAAACCGTTTTCAGAACTGCTTGGTCTCCCTCTCAATCGCAAAACCCTAATCTCAACTCTCTCATCGTCGCTTCCAGCGACGGTTCCATCGCCTCTTACTCCATCGCGTCTACCATCTCTGCTTCCAAGCTCAAAAACCCGTTTGGTTTTATCAATGCTGATACGGATAGTTTATTGGCTGAGCCAGATTGCTTTTTTCAAGCGCATGATGGATCTGCTTATGATGTCAAATTCTACGGTGACGATGATAATGCGATTTTGATGAGTTGCGGTGATGATGGTCGGGTACGAGGATGGAGATGGAACGAACTTACAAGCTCAAAATATCATACTTCTTTGGAAGGAAATAATATCAAGCCCGTCATTGATGTGGTAAATCCTCAACACAAAGGTCCTTGGGGTTCACTTTCACCTCTACCTGAGAATAATGCTATTGCTGTTAATACTCAGGCGGGATCTGTTTTTGCCGCATCTGGTGATTCTTGTGCGTATTGTTGGGATGTGGAAACTGGTAAATTAAAAACAGTATTCAAGGGTCACTCTGATTACTTGCATTGTATTGTTGCTCGCAACTCATCCAATCAGATCATAACTGGTTCAGAGGACGGGACAACACGAATTTGGGATTGCAAAAGTGGAAAGTGTATCCAAGTGATTGATCCAGCAAAACATTTGAAGTTAAAAGGACCTGTTTCATGGGTTGGCTCTGTTGCTTTAGATGCAAGTGAGAGCTGGTTGGCTTGCAGTAGTGGGCGTAATATATCACTTTGGAACCTTCCTGCCTCAGAGTGCACGTTAAAATTTTCCACTCAAGCTTCTGTACAAGACATGTTATTTGACAACAACCAAATTCTGACAGTTGGTGCAGATCCTATACTCAATCGCTTTGACATGAACGGTGAAATCCTTTCACAAATACCATGTGCTTCTCCATCAGCTTTTTCTATCTCCTTACATCCAGCAGGGGTTATTGCGGTTGGAGGTTACGGATGTCTTGTGGATGTTATCTCGCAGTTTGGCAGCCACATGTGCACATTTCGTAGCCAATGGGTTTAG 1131 0.4341 MLGDATNWNEDLYRETVLKEREIQTQTVFRTAWSPSQSQNPNLNSLIVASSDGSIASYSIASTISASKLKNPFGFINADTDSLLAEPDCFFQAHDGSAYDVKFYGDDDNAILMSCGDDGRVRGWRWNELTSSKYHTSLEGNNIKPVIDVVNPQHKGPWGSLSPLPENNAIAVNTQAGSVFAASGDSCAYCWDVETGKLKTVFKGHSDYLHCIVARNSSNQIITGSEDGTTRIWDCKSGKCIQVIDPAKHLKLKGPVSWVGSVALDASESWLACSSGRNISLWNLPASECTLKFSTQASVQDMLFDNNQILTVGADPILNRFDMNGEILSQIPCASPSAFSISLHPAGVIAVGGYGCLVDVISQFGSHMCTFRSQWV 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04368 376 PANTHER THO COMPLEX SUBUNIT 6 HOMOLOG 1 373 IPR042626 -
Vifa4g04368 376 Pfam WD domain, G-beta repeat 252 283 IPR001680 GO:0005515
Vifa4g04368 376 Pfam WD domain, G-beta repeat 197 234 IPR001680 GO:0005515
Vifa4g04368 376 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 202 234 - -
Vifa4g04368 376 ProSiteProfiles Trp-Asp (WD) repeats profile. 202 243 IPR001680 GO:0005515
Vifa4g04368 376 Gene3D - 8 150 IPR015943 GO:0005515
Vifa4g04368 376 SMART WD40_4 195 234 IPR001680 GO:0005515
Vifa4g04368 376 SMART WD40_4 286 322 IPR001680 GO:0005515
Vifa4g04368 376 SMART WD40_4 324 362 IPR001680 GO:0005515
Vifa4g04368 376 SMART WD40_4 14 59 IPR001680 GO:0005515
Vifa4g04368 376 SMART WD40_4 245 283 IPR001680 GO:0005515
Vifa4g04368 376 SMART WD40_4 84 125 IPR001680 GO:0005515
Vifa4g04368 376 SMART WD40_4 154 192 IPR001680 GO:0005515
Vifa4g04368 376 Gene3D - 248 373 IPR015943 GO:0005515
Vifa4g04368 376 Gene3D - 151 247 IPR015943 GO:0005515
Vifa4g04368 376 SUPERFAMILY WD40 repeat-like 39 362 IPR036322 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04368 123 239 Eukaryotic Initiation Factors Gene Family AT2G46290 29.060 1.59e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04368 - - gmx:100806423 633.639