Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04350 ATGAACAGAGGAAATTTAGGTCATGGTCTTAAACTCTCTGTTCCTGCAACTGATCAAGTTGCTTTTGCAAAGTTTCTGACTGAAAGTGGAACGTTTAAGGATGGAGATCTGCTTGTTAACAGAGATGGAGTTCGAATTGTTTCTCAGTCTGAAGTTGAAGCTCCACCACCAATCAAGGCAACAGACAACCAGTTAAGTTTGGCGGACATCGACATAGTGAAAGTTGTTGGGAAGGGAAATGGAGGGGTGGTGCAATTGGTGCAACACAAATGGACCAATCAGTTTTTTGCGTTAAAGACAATTCAAATGAATATTGAAGAGTCCGTACGCAAACAGATAGCTAAAGAGCTGAAAATTAATCAAGCAGCACAATGTCCTTATGTTGTTGTCTGCTACCAATCATTCTATGATAACGGTGTCATATCAATCATCTTAGAGTACATGGATGGAGGTTCCTTGGCTGATCTTCTAAAGAAAGTTAAAACAATTCCAGAGCCTCGTCTTTCTGCCATCTGCGAAGTAAAGATTACTGATTTTGGTGTTAGTGCAATTATGGAAAGTACATCTGGTCAAGCAAATACTTTCATTGGCACGTACAACTATATGTCTCCAGAGAGAATCAATGGAGGCCAGGGTGGCTACAACTACAAAAGTGATATATGGAGTTTGGGACTGATATTGCTCGAGTGTGCTATGGGGCGGTTTCCATATATGCCACCAGATCAAAGTGAAAGATGGGAAAGTATATTTGAGCTTATTGAAACTATTGTCGACAAGCCTCCTCCTAGTGCTCCATCTGAACAATTTTCTCCAGAATTTTGCTCATTTATCTCTGCATGTCTACAGAAAGATCCGAGGAATAGACTGTCCGCTCAGGAACTTTTGGAACTTCCTTTTATCAGCATGTATGATGATCAGCATGTAGATCTCTCAGCTTACTTCTCCAAAGCAGGATCTCCACTTGCAACCTTATTATAG 978 0.407 MNRGNLGHGLKLSVPATDQVAFAKFLTESGTFKDGDLLVNRDGVRIVSQSEVEAPPPIKATDNQLSLADIDIVKVVGKGNGGVVQLVQHKWTNQFFALKTIQMNIEESVRKQIAKELKINQAAQCPYVVVCYQSFYDNGVISIILEYMDGGSLADLLKKVKTIPEPRLSAICEVKITDFGVSAIMESTSGQANTFIGTYNYMSPERINGGQGGYNYKSDIWSLGLILLECAMGRFPYMPPDQSERWESIFELIETIVDKPPPSAPSEQFSPEFCSFISACLQKDPRNRLSAQELLELPFISMYDDQHVDLSAYFSKAGSPLATLL 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04350 325 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Vifa4g04350 325 Pfam Protein kinase domain 73 171 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04350 325 Pfam Protein kinase domain 173 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04350 325 ProSiteProfiles Protein kinase domain profile. 70 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04350 325 SUPERFAMILY Protein kinase-like (PK-like) 64 309 IPR011009 -
Vifa4g04350 325 CDD PKc_MAPKK_plant_like 85 304 - -
Vifa4g04350 325 Gene3D Phosphorylase Kinase; domain 1 44 149 - -
Vifa4g04350 325 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 173 304 - -
Vifa4g04350 325 Gene3D Transferase(Phosphotransferase) domain 1 168 320 - -
Vifa4g04350 325 FunFam Mitogen-activated protein kinase kinase 6 40 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04350 Vifa-Chr4 1376094933 1376098451 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04350 27 323 MAP Kinase Kinase Gene Family AT4G26070 59.337 4.05e-140 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Vifa4g04350 Pkinase 7e-27 CL0016