Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04348 ATGGTTTGGTTTCAGTGCGAAGATTGTGGAGACAACCTCAAAAAACCTAAGTTACCCAGTCACTTCCGATCATGCTCCGCCAACAAGCTTTCATGCATTGACTGTGGCCAAGTGTTTGGGAGAGACACCGTTCAGAATCACACTCAGTGTATTACAGAAGCCGAAAAGTATGGGCCAAAAGGCCAAGGTAAAGCTTTGAATGGTTCAGCTGCCAAGCCTGGCAAAGATAAAAAGCAAAGGCCGGAAGTTGATACTAATGTGGGTTTATCTAATCGCCCTCCGTGGTTCTGTAGCCTTTGCAATACAAAAGCTACAAGCCAGCAAGCGCTTCTTCTCCATGCTGAAGGAAAGAAACACGGGGCAAAAGCCCGAGCATTCCATGCTTCGCAGCAGCCACCAGTCCAGGCAGATAAACCTGCCTCTGATGCAAAAGAAGCAGTGGAGGCTGCTTCTGATGGTACAGAGAAAGGCAAAAATGCAGAGCATCCAAAATTGCAAGAGTCTTCTGAACAAAATATCTTGAAACCAGGGAGTGAAGTTTCTTCAGAAAAGAAAAAGAGGAAACTTGATGCATCAGAGGGTGGCCTTATTAAAAAGTGCAAGAATGACACTTCAGTGGATACAGAAAATGGCGATGTAATTCAAGTCGAGAAGACTAAAGAGAGGAAAATAAAATGGAAGAAGTTTATCAAAGCAGCCTTGAAATCTCATCCGGATGGATTGAAGATGAAGAAACTGAGAAAAGCTGTATTCAAAGCGCTGCAGGAATCTGGCATTGTGGTAAATGAAAATGAATTGAGTGACACACTTGAGCAGAAGATAAGTTCTAGCTCCAAATTTGCAGTTGAGAAGAAGTATGTGCGACTAGTGGCCAAAGATTGA 882 0.4354 MVWFQCEDCGDNLKKPKLPSHFRSCSANKLSCIDCGQVFGRDTVQNHTQCITEAEKYGPKGQGKALNGSAAKPGKDKKQRPEVDTNVGLSNRPPWFCSLCNTKATSQQALLLHAEGKKHGAKARAFHASQQPPVQADKPASDAKEAVEAASDGTEKGKNAEHPKLQESSEQNILKPGSEVSSEKKKRKLDASEGGLIKKCKNDTSVDTENGDVIQVEKTKERKIKWKKFIKAALKSHPDGLKMKKLRKAVFKALQESGIVVNENELSDTLEQKISSSSKFAVEKKYVRLVAKD 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04348 293 SUPERFAMILY beta-beta-alpha zinc fingers 90 126 IPR036236 -
Vifa4g04348 293 MobiDBLite consensus disorder prediction 57 88 - -
Vifa4g04348 293 MobiDBLite consensus disorder prediction 179 206 - -
Vifa4g04348 293 Pfam Zinc-finger of C2H2 type 95 119 - -
Vifa4g04348 293 FunFam UBP1-associated proteins 1C 89 132 - -
Vifa4g04348 293 SUPERFAMILY beta-beta-alpha zinc fingers 30 58 IPR036236 -
Vifa4g04348 293 Gene3D - 1 50 - -
Vifa4g04348 293 SUPERFAMILY beta-beta-alpha zinc fingers 1 26 IPR036236 -
Vifa4g04348 293 FunFam cell growth-regulating nucleolar protein-like 1 50 - -
Vifa4g04348 293 ProSiteProfiles Zinc finger C2HC LYAR-type profile. 27 51 - -
Vifa4g04348 293 MobiDBLite consensus disorder prediction 121 207 - -
Vifa4g04348 293 PANTHER CELL GROWTH-REGULATING NUCLEOLAR PROTEIN LYAR 1 290 IPR039999 GO:0003677
Vifa4g04348 293 Pfam LYAR-type C2HC zinc finger 30 57 IPR014898 -
Vifa4g04348 293 MobiDBLite consensus disorder prediction 141 165 - -
Vifa4g04348 293 ProSiteProfiles Zinc finger C2HC LYAR-type profile. 1 26 - -
Vifa4g04348 293 SMART ZnF_U1_5 92 126 IPR003604 GO:0003676|GO:0008270
Vifa4g04348 293 Gene3D Classic Zinc Finger 72 125 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04348 1 193 C2H2 Transcription Factor Family AT2G19380 38.693 1.29e-39 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04348 K15263 - gmx:100790703 430.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04348 4 1375785896 1375789687 Vifa4g04348 4 1375785896 1375789687 ECH