Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa4g04347 | ATGGAAATCGCTCTTAGCGCCCAACACAATTCTAAATTTGGGCCTGAGAACCTTCCTATTCTGTCTTGTGGAGTTCTCGAGGAAATCAGAGGTTTGGATCCTAAAGACGTAGAGCAGAAGCGAGCTTCTGATTATCCAAGAGGAAATGATGGAGTCTGCTTTCAAATGAGATTGTCTTATAGCCCAGCTGCTCAGTTTCTTCTTTTTCTGGTTCAGTGGACTGATTGCCATCTCGCCGGATTCTTAGGATTGCTTAGAATTCTCATCTCCGAGGCATATGATGAAGGGAAGAAAACCACCATTTATGAAAGAAAAGCTAGTCTAAAGGAGTTCTATGGTGTGATCTTTCCGTCTTTGTTGCAACTCAAGGGAGGAATCACTGAGGTAGAAGAGAGGAAACAAAAAGATTTATGCGCTACAAAGTACAAACCGAAAGATGTGATTAAAAAAGGAAAGCCATATGAAATTGATATAGAGAGAGAAGAAGAATGTCCTATTTGTATGGAGATGAACAACAAATTTGTGTTGCCAAATTGCAACCATTCTTTCTGTATGAAATGCTATAATAACTGGTACACAAGATCTCGATCATGCCCTTTTTGCCGGGACAATCTTAAGAGACTAAACTCTGGTGAGCTTTGGATCTACTTGAGCAGCAGAGAGATAATTGATTTGGAATTAATCAACGAGGAGAATATGAAAAGGTTATTTATGTACATTGATAAGTTGCCTCTGATTTTGCCAGATCAAATATTCATGTCTTATCCTCAAAGCTTTTGA | 780 | 0.3897 | MEIALSAQHNSKFGPENLPILSCGVLEEIRGLDPKDVEQKRASDYPRGNDGVCFQMRLSYSPAAQFLLFLVQWTDCHLAGFLGLLRILISEAYDEGKKTTIYERKASLKEFYGVIFPSLLQLKGGITEVEERKQKDLCATKYKPKDVIKKGKPYEIDIEREEECPICMEMNNKFVLPNCNHSFCMKCYNNWYTRSRSCPFCRDNLKRLNSGELWIYLSSREIIDLELINEENMKRLFMYIDKLPLILPDQIFMSYPQSF | 259 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa4g04347 | 259 | Pfam | Ring finger domain | 163 | 202 | IPR001841 | - | |
Vifa4g04347 | 259 | ProSiteProfiles | Zinc finger RING-type profile. | 164 | 202 | IPR001841 | - | |
Vifa4g04347 | 259 | PANTHER | RING FINGER PROTEIN 41, 151 | 34 | 255 | - | - | |
Vifa4g04347 | 259 | SUPERFAMILY | RING/U-box | 154 | 207 | - | - | |
Vifa4g04347 | 259 | FunFam | RING/U-box superfamily protein | 145 | 211 | - | - | |
Vifa4g04347 | 259 | ProSitePatterns | Zinc finger RING-type signature. | 179 | 188 | IPR017907 | - | |
Vifa4g04347 | 259 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 141 | 224 | IPR013083 | - | |
Vifa4g04347 | 259 | SMART | ring_2 | 164 | 201 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa4g04347 | Vifa-Chr4 | 1375368670 | 1375371448 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa4g04347 | 108 | 206 | C3H Transcription Factor Family | AT5G01960 | 32.692 | 4.93e-09 | 54.3 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa4g04347 | K25840 | - | gmx:100819267 | 352.443 |