Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04347 ATGGAAATCGCTCTTAGCGCCCAACACAATTCTAAATTTGGGCCTGAGAACCTTCCTATTCTGTCTTGTGGAGTTCTCGAGGAAATCAGAGGTTTGGATCCTAAAGACGTAGAGCAGAAGCGAGCTTCTGATTATCCAAGAGGAAATGATGGAGTCTGCTTTCAAATGAGATTGTCTTATAGCCCAGCTGCTCAGTTTCTTCTTTTTCTGGTTCAGTGGACTGATTGCCATCTCGCCGGATTCTTAGGATTGCTTAGAATTCTCATCTCCGAGGCATATGATGAAGGGAAGAAAACCACCATTTATGAAAGAAAAGCTAGTCTAAAGGAGTTCTATGGTGTGATCTTTCCGTCTTTGTTGCAACTCAAGGGAGGAATCACTGAGGTAGAAGAGAGGAAACAAAAAGATTTATGCGCTACAAAGTACAAACCGAAAGATGTGATTAAAAAAGGAAAGCCATATGAAATTGATATAGAGAGAGAAGAAGAATGTCCTATTTGTATGGAGATGAACAACAAATTTGTGTTGCCAAATTGCAACCATTCTTTCTGTATGAAATGCTATAATAACTGGTACACAAGATCTCGATCATGCCCTTTTTGCCGGGACAATCTTAAGAGACTAAACTCTGGTGAGCTTTGGATCTACTTGAGCAGCAGAGAGATAATTGATTTGGAATTAATCAACGAGGAGAATATGAAAAGGTTATTTATGTACATTGATAAGTTGCCTCTGATTTTGCCAGATCAAATATTCATGTCTTATCCTCAAAGCTTTTGA 780 0.3897 MEIALSAQHNSKFGPENLPILSCGVLEEIRGLDPKDVEQKRASDYPRGNDGVCFQMRLSYSPAAQFLLFLVQWTDCHLAGFLGLLRILISEAYDEGKKTTIYERKASLKEFYGVIFPSLLQLKGGITEVEERKQKDLCATKYKPKDVIKKGKPYEIDIEREEECPICMEMNNKFVLPNCNHSFCMKCYNNWYTRSRSCPFCRDNLKRLNSGELWIYLSSREIIDLELINEENMKRLFMYIDKLPLILPDQIFMSYPQSF 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04347 259 Pfam Ring finger domain 163 202 IPR001841 -
Vifa4g04347 259 ProSiteProfiles Zinc finger RING-type profile. 164 202 IPR001841 -
Vifa4g04347 259 PANTHER RING FINGER PROTEIN 41, 151 34 255 - -
Vifa4g04347 259 SUPERFAMILY RING/U-box 154 207 - -
Vifa4g04347 259 FunFam RING/U-box superfamily protein 145 211 - -
Vifa4g04347 259 ProSitePatterns Zinc finger RING-type signature. 179 188 IPR017907 -
Vifa4g04347 259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 224 IPR013083 -
Vifa4g04347 259 SMART ring_2 164 201 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04347 Vifa-Chr4 1375368670 1375371448 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04347 108 206 C3H Transcription Factor Family AT5G01960 32.692 4.93e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04347 K25840 - gmx:100819267 352.443