Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04334 ATGGGAAGAAGTCCTTGTTGTTCAAAGGAAGGCTTGAATAGAGGTGCTTGGACTTCTCATGAAGACAAAATCCTCACTAATTACATTAAGCTTCATGGAGAAGGAAAATGGAGAAACCTTCCCAAAAGAGCAGGTTTGAAAAGATGTGGAAAAAGTTGTAGACTTAGATGGTTGAATTATCTAAGACCAGATATCAAAAGAGGTAATATATCGTCTGACGAAGAAGAACTTATCATCAGACTCCACAAATTACTCGGAAACAGATGGTCTCTTATAGCGGGAAGATTACCGGGACGAACAGACAATGAAATAAAGAATTATTGGAACACGAATTTAGGGAAAAAAGTGAAAGATCTGAATCAACAAAACACCAACAATTCTTCTTCTCCTACGAAGATCTCTGCAAAACCGAAAAACACAAAGATCACACAGAAACAGAACAATCCTAAGCCAATGATGCAAAACTCCCATGTTAACAAAGATGAGACAGAGACGAAAACAGAAACAAAACAGTCAATGGCTGTGGATGCAGTGGCGAGTGATTCGATGAGTATCAACAACAACAGAAACGGTTTTCTGTCATTTCCTGATGAAGAGAAAGAACTGTCTACAGATTTGCTGGTTGATTTCAACATTGGAGATGATATTTGCTTGTCTGAGCTTCTGAACTCCAAGTTCTCGACTACGTGCAGTTTCGATTATAACGATCTGTTATCGTCGCCGTGTTCGGATCAGACTCCTTTGTTCTCTGATGAGATTTTGAAGAACTGGACACAATGTAACTTTGGTGATGAAACTAATGTGTCCAACAATCTTCATTCTTTCACTTCCTTTCTTGAATCCACTGAGGAAGTTCTAGGAGAATGA 867 0.3875 MGRSPCCSKEGLNRGAWTSHEDKILTNYIKLHGEGKWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISSDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVKDLNQQNTNNSSSPTKISAKPKNTKITQKQNNPKPMMQNSHVNKDETETKTETKQSMAVDAVASDSMSINNNRNGFLSFPDEEKELSTDLLVDFNIGDDICLSELLNSKFSTTCSFDYNDLLSSPCSDQTPLFSDEILKNWTQCNFGDETNVSNNLHSFTSFLESTEEVLGE 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04334 288 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Vifa4g04334 288 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vifa4g04334 288 CDD SANT 16 61 IPR001005 -
Vifa4g04334 288 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vifa4g04334 288 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 179 - -
Vifa4g04334 288 Gene3D - 70 174 - -
Vifa4g04334 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vifa4g04334 288 MobiDBLite consensus disorder prediction 117 171 - -
Vifa4g04334 288 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vifa4g04334 288 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vifa4g04334 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vifa4g04334 288 MobiDBLite consensus disorder prediction 117 156 - -
Vifa4g04334 288 Gene3D - 14 66 - -
Vifa4g04334 288 FunFam Transcription factor TT2 70 141 - -
Vifa4g04334 288 CDD SANT 71 112 IPR001005 -
Vifa4g04334 288 FunFam MYB-related transcription factor 13 66 - -
Vifa4g04334 288 SMART sant 66 114 IPR001005 -
Vifa4g04334 288 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04334 Vifa-Chr4 1369312621 1369313838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04334 1 216 MYB Transcription Factor Family AT4G38620 48.611 3.63e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa4g04334 Myb_DNA-binding 2.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04334 K09422 - gmx:100802704 380.178