Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04329 ATGATGAATGGAAGAAACAGGTATCCTTTTACTCCTTCTCAATGGCAAGAGCTTGAACATCAAGCTCTTATTTACAAATACATGGCTTCTGGTATCAATATTCCACCTGATCTTCTCTTCACTATCAAAAGAAGCTACTTGGAATCTCCTCTCACTACTTCAAGGCTCTCACCTCACCAGTCTCAACACTTTGGGTGGAACTATTTGCCAATGGGATTAGGGAGAAAAATAGACCCAGAGCCAGGGAGGTGTAGAAGAACAGATGGAAAGAAATGGAGGTGTTCAAAAGAAGCATATCCAGATTCAAAGTACTGTGAGAGACACATGCATAGAGGTAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACAAACACAGATTCTGTTTCTGCTGTTGCTGTTGCTACTTCATCAATCTTATCAATGACTAAAAATAGCACTAGTCTTGATACTGATAATAACACTGCAGCACTTACCCCAACCTCTCATCATGATAGTACTACTTACCATTATCCTCAACCTCAACTCTCTTCTTATGCTTCTTCTCATCTTCAACACTCTTTCCTCTACCATAATAACCCTCCACCTTCAAGGCCTAGTTTCTCATTTCAAGACAACAACAGTACTGCTCCCATGTTTCTTGACAGTACTGGTTCTTCCTCTCACAATAACAACAACACTGATTGCAGGTATGTTTATGGGCTGAGAGAAGAGGTAGATGAGCATGCTTTCTTCAATGAACCATCTGGAACCATAAGAAGTTTATCAGCTTCATCTATGGATGATCAATGGCAACTCACACCACTTACTATAAGCCCATCTTCCACTTCAAAACAGAGGAGTTGCTCTGGTTTATCCAATGATCAGAATGAGTACTCTTATTTACAACTTCAAAGCCTCACTAACAACATCAACAACAACAACAACAACAACAACTCAAAACAAGCACAGCAAGATCAAGGCTGTTACATCTCAGGCAGTGAAGAAACATTCATGAAAGATGTGAAAGAAGAACCTCAAAAGATTTTTCATCGTTTTTTCGACGAATGGCCACCGAAAAGCAGCAGAAACTCATGGCTTGATTTGGATGATAAATCATCCACCACTCAGCTTTCAATTTCCATTCCAACATCATCTCATGATTTCACAACTTTCAGTTCCAATAACCAAACAGATAGTTGA 1188 0.3948 MMNGRNRYPFTPSQWQELEHQALIYKYMASGINIPPDLLFTIKRSYLESPLTTSRLSPHQSQHFGWNYLPMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTNTDSVSAVAVATSSILSMTKNSTSLDTDNNTAALTPTSHHDSTTYHYPQPQLSSYASSHLQHSFLYHNNPPPSRPSFSFQDNNSTAPMFLDSTGSSSHNNNNTDCRYVYGLREEVDEHAFFNEPSGTIRSLSASSMDDQWQLTPLTISPSSTSKQRSCSGLSNDQNEYSYLQLQSLTNNINNNNNNNNSKQAQQDQGCYISGSEETFMKDVKEEPQKIFHRFFDEWPPKSSRNSWLDLDDKSSTTQLSISIPTSSHDFTTFSSNNQTDS 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04329 395 SMART QLQ_2 8 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vifa4g04329 395 Pfam QLQ 9 42 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vifa4g04329 395 Pfam WRC 79 121 IPR014977 -
Vifa4g04329 395 ProSiteProfiles WRC domain profile. 78 122 IPR014977 -
Vifa4g04329 395 MobiDBLite consensus disorder prediction 189 227 - -
Vifa4g04329 395 MobiDBLite consensus disorder prediction 147 176 - -
Vifa4g04329 395 Coils Coil 299 319 - -
Vifa4g04329 395 PANTHER GROWTH-REGULATING FACTOR 5 9 383 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vifa4g04329 395 ProSiteProfiles QLQ domain profile. 9 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04329 Vifa-Chr4 1367777347 1367778848 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04329 6 121 GRF Transcription Factor Family AT3G13960 69.828 1.46e-53 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vifa4g04329 WRC 8.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04329 - - cam:101508073 573.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04329 4 1367777347 1367778848 Vifa4g04329 4 1367777347 1367778848 ECH
Vifa4g04329 4 1367777347 1367778848 Vifa1g08697 1 1372501153 1372502759 PCT