Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04311 ATGACTGTGATGAAAATTATGTGGAAGTCAATATTTCCAAGCTGTTACAAGGCTGAAGATACCGAATACTCTTCAGCCAAAGCCAAAGAAACAACAAAAGTGGTTGCTACAAAGACAAATTCTTTCAACAGAATCTCTCTCACGGATCTGAGTTTTCCAAGTGCTACAACACTTTCTGAAGATCTTTCAATTTCTTTAGCTGGTTCTAATCTTTATGTTTTCACTCTAGCTGAGCTGAAGACTATTACTCAGAGTTTTTCTTCAACGAATTTTCTTGGTGAAGGAGGGTTTGGTCCTGTCCATAAAGGTTTCATTGATGATAAGGTTAGACATGGACTTGAACCTCAACCTGTGGCTGTTAAGCTCTTGGATTTGGATGGCTCTCAGGGTCATAAAGAATGGCTGACTGAGGTTGTGTTTCTTGGTCAACTGAGACATGAACATCTTGTGAAGCTGATTGGATATTGCTGTGAAGAAGAACATAGGCTTTTGGTTTATGAGTATTTACCAAGAGGAAGCTTAGAAAATCAACTATTTAGAAGATATTCAGCATCATTACCATGGTCAACAAGAATGAAAATTGCTGTTGGAGCTGCAAAAGGTCTAGCCTTTTTACATGATGCAAAGAAACCAGTCATCTACAGAGATTTCAAAGCTTCAAACATCTTATTAGACTCAGATTATAATGCAAAACTCTCTGATTTTGGCTTGGCTAAAGATGGCCCTGAAGGTGATGACACACATGTTTCAACTAGAGTTATGGGCACTCAAGGTTATGCCGCACCCGAATATATCATGACAGGACATTTGACAGCAATGAGTGATGTGTATAGTTTTGGCGTAGTCCTACTGGAAGTATTAACCGGAAGAAGATCAGTGGACAAGGCACGTCCACCAAGAGAACACAATCTAGTGGAATGGGCCAGACCAGTTTTAAACGACGCTCGGAAACTGAGCAGAATAATGGATCCAAGGCTTGAAGGACAGTACTCAGAAATGGGAGCAAGAAAAGCAGCTGCATTAGCTTATCAATGCTTAAGCCATAGACCAAGAAACCGACCTACAATGTCAACCGTGGTTAACACTCTCGAACCTCTTCAAGATTTCGACGATATACCAATAGGTACATTTGTTTACACAGCTCCTCCGAGTGATGTTAGTAATAACGAAGTGAAGAACGAGAATAACAACACTGATACAGCAAAAGAAAGAAAAAGAGAAAGTTCGCATCATAATCATCAACATCGTAGAAACCAACATGGCCATAGTAATAATAATAATAATGAAGTAGAACATACGAAAGACGGTGAAGAATATTATGATAATCCTAGAGAGAAAAGAAGGGAAAGTAGTGAGAGTCATAGAAGACATCATCATCGTCGTCCGAATGGACATAAGCATCCATTAAAGTCACCAAAAGAACAAAGTGGGTCACATTCACACTCACCTGATACATCCATTACATCAGAAAGCCAAGGAAATTAG 1485 0.3933 MTVMKIMWKSIFPSCYKAEDTEYSSAKAKETTKVVATKTNSFNRISLTDLSFPSATTLSEDLSISLAGSNLYVFTLAELKTITQSFSSTNFLGEGGFGPVHKGFIDDKVRHGLEPQPVAVKLLDLDGSQGHKEWLTEVVFLGQLRHEHLVKLIGYCCEEEHRLLVYEYLPRGSLENQLFRRYSASLPWSTRMKIAVGAAKGLAFLHDAKKPVIYRDFKASNILLDSDYNAKLSDFGLAKDGPEGDDTHVSTRVMGTQGYAAPEYIMTGHLTAMSDVYSFGVVLLEVLTGRRSVDKARPPREHNLVEWARPVLNDARKLSRIMDPRLEGQYSEMGARKAAALAYQCLSHRPRNRPTMSTVVNTLEPLQDFDDIPIGTFVYTAPPSDVSNNEVKNENNNTDTAKERKRESSHHNHQHRRNQHGHSNNNNNEVEHTKDGEEYYDNPREKRRESSESHRRHHHRRPNGHKHPLKSPKEQSGSHSHSPDTSITSESQGN 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04311 494 SUPERFAMILY Protein kinase-like (PK-like) 62 364 IPR011009 -
Vifa4g04311 494 MobiDBLite consensus disorder prediction 475 494 - -
Vifa4g04311 494 Gene3D Phosphorylase Kinase; domain 1 49 168 - -
Vifa4g04311 494 FunFam Serine/threonine-protein kinase BIK1 53 168 - -
Vifa4g04311 494 MobiDBLite consensus disorder prediction 451 467 - -
Vifa4g04311 494 PANTHER OS01G0588500 PROTEIN-RELATED 35 367 - -
Vifa4g04311 494 MobiDBLite consensus disorder prediction 380 494 - -
Vifa4g04311 494 ProSiteProfiles Protein kinase domain profile. 86 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04311 494 Pfam Protein tyrosine and serine/threonine kinase 90 363 IPR001245 GO:0004672|GO:0006468
Vifa4g04311 494 FunFam Probable serine/threonine-protein kinase PBL8 169 381 - -
Vifa4g04311 494 MobiDBLite consensus disorder prediction 427 450 - -
Vifa4g04311 494 Gene3D Transferase(Phosphotransferase) domain 1 169 373 - -
Vifa4g04311 494 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Vifa4g04311 494 MobiDBLite consensus disorder prediction 381 395 - -
Vifa4g04311 494 CDD STKc_IRAK 92 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04311 Vifa-Chr4 1363310326 1363312558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04311 74 406 Glycoside Hydrolase AT3G07070 50.595 2.07e-104 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vifa4g04311 PK_Tyr_Ser-Thr 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04311 - - mtr:25494166 778.859