Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04298 ATGGCCGTTGTTCGCTTCCTTATCTTCATCCTTCTCATCCTCATCTCTCTCCCTTCCCAATGCGTTTCCGTTCCTGAATCTGAAGCACTCCTCAAGCTCAAACAATCATTCACAAACTCACAGTCTCTTTCTTCATGGGTCCCTAATCAAAACCCGTGCTCTTCAAGATGGGTTGGTGTGATTTGTTTCGACAACATCATATCGAGTCTTCATCTCTCTAATTTAGGACTCGCGGGTAAAATTGACATTGATTCTCTATTACAGATTCCATCCATAAGAACCATAAGTTTCGCTAACAACTCTTTCTCTGGTCCCATTCCCGAGTTCAATAAACTTGGTGCTCTTAAAGCTCTTTACTTAGCACAAAACCAATTCTCAGGACCTATTCCTCCACAATATTTTTCACATTTAGCTTCTCTGAAAAAAGCATGGCTCAACAACAACAACTTCTCAGGAAATATACCAGAATCGTTAACAAATCTCCGTTTCCTCGGCGAGTTACATCTCGAAAATAACGAGTTCTCGGGTCCTATTATAGAATTAAAACAAGATATTAAATCATTTGACGTATCTAACAATAAGTTACAAGGTTCAATACCACCTACAATGTCTAGGTTCGACGCAAAATCTTTTGCAGGAAATGAAGAGCTTTGTGGGAAGCCTCTTGATAAAGAATGTGATCCTTCTTTGATTTCAATGCCAACAACACCTGAAAGTGAACAAGGTTCTGGATGGGCTTTAAAGTTTGTTGCAATTCTAATTGTTGCAACACTTGTGGCGGTTATTTTCACATTAATTAAATCAAAACGCAGAGCTGACGATGATTTTAGTGTTATGAGTAGAGAAAATAATGATGATGTGGTTCAGGTTCATGTTCCTAGCTCCAACTATAGTAGAGCATCAGAAGTCAGTAAAAAAGAATCTAAGAGAGGTTCTTCAAAGAGCGGTGGAATGGGTGATCTTATTATGGTGAATGATGAAAAAGGTGTGTTTGGTTTACCTGATTTGATGAAAGCTGCTGCTGAGGTTTTGGGAAATGGTGGCTTGGGTTCTGCTTATAAAGCTGCAATGACTAATGGGTTATCCGTAGTTGTCAAGAGGATGAGAGAGATGAATAAAGTGAGTAGAGATATATTTGATGCTGAGATGAGACGGTTTGGGAGACTCAGAAACCGTAATATTTTGGCTCCTTTGGCTTACCATTACCGCAGAGAGGAGAAGTTATTTGTTACTGAATATATGCCCAAAGGAAGCTTGTTATATGTCTTGCATGGTGATAGAGGATCAAGCCATGCTGAATTAAATTGGCCAACTCGATTGAAGATTGTGAAGGGAATCGCTCGTGGTTTAACCTTTCTCTACACCGAATTCGCATCCGGAGATCTTCCGCATGGAAACCTTAAATCAAGCAATATACTTCTAACTGATAATTATGAGCCACTTTTAAGTGACTTTGCATTTCATCCATTAATCAACCCAAACTATGCAGCACAAACAATGTTTGCATACAAAACTCCTGATTATGTTGTCTACCAACATGTTTCACAGAAAACCGACGTTTACTGTCTCGGAATTATCATTCTTGAAATCATTACTGGCAAGTTCCCTTCTCAATATCACAGTAATGGTAAAGGTGGCACTGATGTAGTTCAATGGGTTTTCACAGCAATTTCTGAGAGAAGAGAAGCAGAATTGATTGATCCAGAGTTAGCAGGAAATAATGCAGATTCAATTAATCAAATGCTACAACTTATTCAAATCGGGGCTGCTTGCACAGAAAGTAATCCTGAACAACGACTTAACATGAAGGAAGCTATTAGGAGGATAGAGGAATTACAAGTTTAA 1845 0.3886 MAVVRFLIFILLILISLPSQCVSVPESEALLKLKQSFTNSQSLSSWVPNQNPCSSRWVGVICFDNIISSLHLSNLGLAGKIDIDSLLQIPSIRTISFANNSFSGPIPEFNKLGALKALYLAQNQFSGPIPPQYFSHLASLKKAWLNNNNFSGNIPESLTNLRFLGELHLENNEFSGPIIELKQDIKSFDVSNNKLQGSIPPTMSRFDAKSFAGNEELCGKPLDKECDPSLISMPTTPESEQGSGWALKFVAILIVATLVAVIFTLIKSKRRADDDFSVMSRENNDDVVQVHVPSSNYSRASEVSKKESKRGSSKSGGMGDLIMVNDEKGVFGLPDLMKAAAEVLGNGGLGSAYKAAMTNGLSVVVKRMREMNKVSRDIFDAEMRRFGRLRNRNILAPLAYHYRREEKLFVTEYMPKGSLLYVLHGDRGSSHAELNWPTRLKIVKGIARGLTFLYTEFASGDLPHGNLKSSNILLTDNYEPLLSDFAFHPLINPNYAAQTMFAYKTPDYVVYQHVSQKTDVYCLGIIILEIITGKFPSQYHSNGKGGTDVVQWVFTAISERREAELIDPELAGNNADSINQMLQLIQIGAACTESNPEQRLNMKEAIRRIEELQV 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04298 614 Gene3D Transferase(Phosphotransferase) domain 1 415 614 - -
Vifa4g04298 614 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 11 613 IPR046959 -
Vifa4g04298 614 FunFam Nuclear pore complex protein NUP107 23 180 - -
Vifa4g04298 614 Gene3D Phosphorylase Kinase; domain 1 344 414 - -
Vifa4g04298 614 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Vifa4g04298 614 Gene3D Ribonuclease Inhibitor 134 229 IPR032675 -
Vifa4g04298 614 SUPERFAMILY Protein kinase-like (PK-like) 342 609 IPR011009 -
Vifa4g04298 614 Gene3D Ribonuclease Inhibitor 25 133 IPR032675 -
Vifa4g04298 614 ProSiteProfiles Protein kinase domain profile. 338 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04298 614 SUPERFAMILY L domain-like 24 205 - -
Vifa4g04298 614 Pfam Protein kinase domain 342 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04298 614 MobiDBLite consensus disorder prediction 296 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04298 Vifa-Chr4 1357647069 1357649106 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04298 1 614 Receptor kinase-like Gene Family AT3G42880 51.017 0.0 630
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vifa4g04298 Pkinase 1.9e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04298 - - gmx:100788667 939.488