Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04293 ATGTCGACTTCATCGGAGAAATCCACGTTTTCTCAAACATGCAACCTCCTCAGCCGATACATCAAACACAATGGTAATTCCGGTAACATAACAAACGTTGTTACACCAAAGAATCTTACCACTATGGATTTCTTAACTCCAATGTCTATGGTTAAGGAACCGAAAGGTAAAGCGGCACAATTGACTATGTTTTATAATGGACAAGTTATTGTTCTGGATGATTTTCCGGCTGAAAAAGTGGAAGAGTTAAAGTCATTTGCAAAGACACAGACACCGACACAGTCTTTGGTTACTCCGGTTCCGAAACTACCTTGTGGGACAATTGTTGTTGACATGCCAATTGCTAGAAAAGCTTCACTTCTTAGATTCATGGAGAAGAGAAAAAACAGAGTTGCTGCGAAATCACCCTACTATAAAACGATTACAACCGTTTCTGATCCAGTGAAGGCTTCTGAATCGATTCCATGGCTTGTTTTAGGAGCTAAATCAACGTGA 495 0.4 MSTSSEKSTFSQTCNLLSRYIKHNGNSGNITNVVTPKNLTTMDFLTPMSMVKEPKGKAAQLTMFYNGQVIVLDDFPAEKVEELKSFAKTQTPTQSLVTPVPKLPCGTIVVDMPIARKASLLRFMEKRKNRVAAKSPYYKTITTVSDPVKASESIPWLVLGAKST 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04293 164 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 5 144 IPR040390 -
Vifa4g04293 164 Pfam tify domain 57 83 IPR010399 -
Vifa4g04293 164 Pfam Jas motif 113 138 IPR018467 -
Vifa4g04293 164 ProSiteProfiles Tify domain profile. 54 89 IPR010399 -
Vifa4g04293 164 SMART tify_2 54 89 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04293 Vifa-Chr4 1355729892 1355730476 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04293 4 162 Tify Gene Family AT1G19180 30.894 1.61e-20 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vifa4g04293 tify 2.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04293 K13464 - gmx:100802800 131.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04293 4 1355729892 1355730476 Vifa4g04293 4 1355729892 1355730476 ECH