Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04292 ATGCTACCTCAAAAGCTAAGACAGAATCCAATTATGCAACACTCTCTTTACCATCATCCAGCTCTTATCACTCCTCCGCAGATAGAGCCTATCTTGAGTGGAAATCTGCCTCCTGGCTTTGATTCGAGTACTTGCCGCAGTGTCTATGTGGGCAACATTCATCCTCAGGTTACAGAGCCACTTCTTCAAGAGCTTTTTTCAAGTGCTGGTGCGCTTGAAGGTTGCAAGCTTATTCGGAAAGAGAAGTCATCATATGGATTTGTGGACTACTTTGATCGCAGTTCAGCTGCTATTGCTATTGTAACTCTCAACGGGAGGAATATTTTTGGACAGTCCATCAAAGTTAACTGGGCTTATACTCGAGGCCAGAGAGAAGACACTTCAGGACACTTTCATATTTTTGTTGGTGACCTTAGTCCCGAGGTTACAGATGCAACTCTGTATGCTTGCTTCTCTGTGTATTCTAGTTGCTCAGATGCTAGGGTAATGTGGGATCAGAAGACAGGCCGATCCAGGGGATTTGGATTTGTCTCTTTTCGAATTCAGCAGGAAGCCCAAAGTGCCATAAACGAGTTAACTGGTAAATGGCTTGGCAGTAGACAAATTCGTTGTAATTGGGCCACAAAAGGAGCTAATACCAATGATGAAAAGCAGAGTTCAGATTGCAAAGTTGTTGTGGAGTTAGCTAGTGGAGTATCCGGGGAGATCACAGAAGAACGGCAAGAAATTATCAGTGATGACGGTCCTGAGAAGAATCCCCAATACACCACTGTTTATGTTGGCAATCTTGCTCCAGAGGTTACTTCTGTTGATCTCCATCATCATTTTCATGCCCTCGGGGTTGGAACCATTGAAGATGTTAGGGTGCAACGGGATAAAGGTTTCGGGTTTGTCAGATACAGTACTCATGGTGAAGCAGCCCTTGCTATACAGATGGGTAATGCTCGGTTTCTGTTTGGTAAACCTATCAAGTGTTCATGGGGTAGCAAGCCAACTCCTCCAGGAACAGCCTCTACTCCTCTTCCCCCACCAGCTTCTCCGCATGTACCAGTGCCAGGTTTTTCACTTGCCGGTCTTGCAGCGTATGAACGCCAGATGGCTTTGAGCAAAATGAATGGCACACACGCCCTTCTGCAACAGCAGAATCAGCATGCTCTAAAGCAGGCAGCCATGGGAATGGGTGCTCTTGGAGCTGGGTATGGTGCAGGATTCTCTAATGTTGCCGCCGCCCAGAATCTCATGTACTATCAGTAA 1254 0.4625 MLPQKLRQNPIMQHSLYHHPALITPPQIEPILSGNLPPGFDSSTCRSVYVGNIHPQVTEPLLQELFSSAGALEGCKLIRKEKSSYGFVDYFDRSSAAIAIVTLNGRNIFGQSIKVNWAYTRGQREDTSGHFHIFVGDLSPEVTDATLYACFSVYSSCSDARVMWDQKTGRSRGFGFVSFRIQQEAQSAINELTGKWLGSRQIRCNWATKGANTNDEKQSSDCKVVVELASGVSGEITEERQEIISDDGPEKNPQYTTVYVGNLAPEVTSVDLHHHFHALGVGTIEDVRVQRDKGFGFVRYSTHGEAALAIQMGNARFLFGKPIKCSWGSKPTPPGTASTPLPPPASPHVPVPGFSLAGLAAYERQMALSKMNGTHALLQQQNQHALKQAAMGMGALGAGYGAGFSNVAAAQNLMYYQ 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04292 417 Gene3D - 7 129 IPR012677 -
Vifa4g04292 417 Gene3D - 130 222 IPR012677 -
Vifa4g04292 417 SMART rrm1_1 132 205 IPR000504 GO:0003723
Vifa4g04292 417 SMART rrm1_1 257 326 IPR000504 GO:0003723
Vifa4g04292 417 SMART rrm1_1 47 116 IPR000504 GO:0003723
Vifa4g04292 417 SUPERFAMILY RNA-binding domain, RBD 249 335 IPR035979 GO:0003676
Vifa4g04292 417 SUPERFAMILY RNA-binding domain, RBD 126 213 IPR035979 GO:0003676
Vifa4g04292 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 203 IPR000504 GO:0003723
Vifa4g04292 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 258 324 IPR000504 GO:0003723
Vifa4g04292 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 114 IPR000504 GO:0003723
Vifa4g04292 417 FunFam Oligouridylate-binding protein 1C 233 334 - -
Vifa4g04292 417 CDD RRM2_PUB1 130 209 - -
Vifa4g04292 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 209 IPR000504 GO:0003723
Vifa4g04292 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 256 330 IPR000504 GO:0003723
Vifa4g04292 417 FunFam oligouridylate-binding protein 1-like isoform X2 129 224 - -
Vifa4g04292 417 Gene3D - 232 334 IPR012677 -
Vifa4g04292 417 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 43 333 - -
Vifa4g04292 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 120 IPR000504 GO:0003723
Vifa4g04292 417 SUPERFAMILY RNA-binding domain, RBD 29 126 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04292 Vifa-Chr4 1355691154 1355697350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04292 47 330 Eukaryotic Initiation Factors Gene Family AT2G23350 30.508 1.97e-25 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04292 K13201 - gmx:100813736 657.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04292 4 1355691154 1355697350 Vifa4g04292 4 1355691154 1355697350 ECH