Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04289 ATGGCGACTACTCAGCTCACTGCTTCATCGATTTCAACGAGGAATTTGTCATCCTTTGAAGGGCTTCGAACTTCATCAACTCAATTTCGTTCTAAGAATGTTAGAATCGGTACTCCCACACAAAGGTTGTTCCCGTCTATGGTTGTTAAAGCTGCCACTGTCGTTGCCCCAAAGCATACCTTACTCAAGCCACTAGGTGATAGAGTACTGGTAAAAATTAAGGATGCAGAAGAGAAAACTGTGGGTGGAATTATACTGCCATCAACTGCTCAATCAAAGCCTCAAGGGGGTGAGGTGGTTGCTGTTGGAGAAGGGAAGACAGTTGGGAATAACAAAGTGGAAATTAGTGCAGGTGCACAAGTTGTGTACTCAAAGTATGCAGGGACTGAGGTGGAGTTCAATGGTTCAAAACATCTTATACTTAAAGATGATGACATTGTTGGTATTCTTGAAACCGATGAGGTCAAGGATCTTAAACCCTTGAGCGATAGAGTCTTGATAAAGGTTGCAGAAGCCGAGAAAAAAACTGCCGGTGGTTTGTTGCTCACGGAAGCAACCAAGGAGAAACCATCAGTTGGCACTGTGATAGCAGTTGGTCCAGGATCTGTGGATGATGAAGGCAACAGAACACCATTATCCATTACACCAGGGAATACAGTTCTGTACTCCAAATATGCGGGGAATGACTTCAAGGGCAAAGATGGTTCTGACTATATTGCTTTGAGAGCCTTAGATGTCATGGCCATTCTCTCTTAG 756 0.4392 MATTQLTASSISTRNLSSFEGLRTSSTQFRSKNVRIGTPTQRLFPSMVVKAATVVAPKHTLLKPLGDRVLVKIKDAEEKTVGGIILPSTAQSKPQGGEVVAVGEGKTVGNNKVEISAGAQVVYSKYAGTEVEFNGSKHLILKDDDIVGILETDEVKDLKPLSDRVLIKVAEAEKKTAGGLLLTEATKEKPSVGTVIAVGPGSVDDEGNRTPLSITPGNTVLYSKYAGNDFKGKDGSDYIALRALDVMAILS 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04289 251 SMART Cpn10_2 61 150 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vifa4g04289 251 SMART Cpn10_2 157 250 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vifa4g04289 251 Pfam Chaperonin 10 Kd subunit 62 149 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vifa4g04289 251 Pfam Chaperonin 10 Kd subunit 158 249 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vifa4g04289 251 SUPERFAMILY GroES-like 61 151 IPR011032 -
Vifa4g04289 251 ProSitePatterns Chaperonins cpn10 signature. 62 86 IPR018369 GO:0005524|GO:0006457
Vifa4g04289 251 Gene3D GroES chaperonin 56 153 IPR037124 GO:0006457
Vifa4g04289 251 Gene3D GroES chaperonin 154 251 IPR037124 GO:0006457
Vifa4g04289 251 SUPERFAMILY GroES-like 157 250 IPR011032 -
Vifa4g04289 251 FunFam 10 kDa chaperonin 155 251 - -
Vifa4g04289 251 PIRSF Cpn21 1 251 IPR017416 GO:0006457|GO:0046914|GO:1901671
Vifa4g04289 251 Hamap Co-chaperonin GroES [groES]. 157 251 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vifa4g04289 251 CDD cpn10 62 150 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vifa4g04289 251 FunFam 20 kDa chaperonin, chloroplastic 55 152 - -
Vifa4g04289 251 CDD cpn10 158 250 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vifa4g04289 251 PANTHER 10 KDA HEAT SHOCK PROTEIN 60 149 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vifa4g04289 251 PRINTS 10kDa chaperonin signature 84 105 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vifa4g04289 251 PRINTS 10kDa chaperonin signature 116 128 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vifa4g04289 251 PRINTS 10kDa chaperonin signature 62 77 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vifa4g04289 251 PRINTS 10kDa chaperonin signature 137 150 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vifa4g04289 251 ProSitePatterns Chaperonins cpn10 signature. 158 182 IPR018369 GO:0005524|GO:0006457
Vifa4g04289 251 Hamap Co-chaperonin GroES [groES]. 61 151 IPR020818 GO:0005524|GO:0006457|GO:0044183
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04289 Vifa-Chr4 1354756780 1354758231 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04289 1 251 Calmodulin-binding Proteins AT5G20720 74.118 7.18e-132 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04289 K04078 - gmx:100804915 387.111