Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04287 ATGAAGGCTCCACCTAATGGTTTCTTGCCTAATTCCGGAGAAGGGGAAAGGAAGACAATCAATTCGGAGTTATGGCATGCTTGTGCTGGACCTTTGGTTTCTTTGCCACCTGTTGGAAGTCTTGTGGTTTACTTCCCTCAAGGACATAGTGAGCAAGTTGCAGCTTCTATGCAAAAGCAGACCAACTTCATACCTAGTTACCCTAACCTTCCATCCAAGTTGATTTGCATGCTTCACAACGTTGCCCTGCATGCTGATCCTGAAACTGACGAAGTCTATGCACAGATGACCCTTCAACCTGTAACCAAATATGACAAGGAAGCAATATTGGCATCAGACTTTGGCCTCAAACAAAACCGTCAACCGGCGGAATTCTTTTGCAAGACTCTAACAGCTAGTGACACTAGCACACATGGTGGATTTTCTGTTCCTCGTAGAGCAGCTGAGAAAATATTCCCACCTTTGGATTTTTCAATGCAACCTCCGGCTCAGGAGCTTGTTGCTAAAGATTTGCATGACAATTCGTGGGCATTTAGACATATTTATCGGGGACAACCAAAGAGACACTTATTGACTACTGGTTGGAGTGTATTTATCAGCACAAAAAGACTTTTTGCCGGAGATTCTGTTCTTTTTATCAGAGATGAAAAACAGCAACTTCTTTTGGGTTTGAGGCGCGCTAATAGACAGCAGCCAGCGCTTTCTTCATCCGTGATATCCAGCGACAGTATGCATATTGGGATTTTAGCTGCTGCAGCTCATGCTGCTGCAAATAACAGTCCTTTTACTATATATTACAATCCAAGGGCCAGCCCCTCCGAATTTGTTATTCCGTTGGCCAAATATAACAAAGCCATGTACGCTCAAGTTTCTCTTGGAATGAGATTTAGAATGATGTTTGAAACCGAGGAGTCTGGGGTACGAAGATATATGGGTACAGTTACTGGAATTAGTGACTTGGATCCTGTCCGATGGAAAAATTCACAATGGCGCAATCTTCAGATTGGATGGGATGAATCGTCAGCTGGTGAACGCCCAAGCAGAGTTTCGATTTGGGATGTTGAGCCAGTAGTGACTCCTTTCTATATTTGTCCACCTCCATTTTTCAGGCAAAAGTTCCCAAGGCAACCTGGAATGCCAGATGATGAGTCCGATGTAGAAAATGCTTTCAAGAGAGCTATGCCCTGGCTTGGAGACGAATTTGGCATGAAGGACGCCTCAAGTTCAGGCTTCCCTGGTTTGAGTTTAGTGCAGTGGATGAGCATGCAGCAGAATAATCAGTTTTCAGGTGGTCAATCTGGATGTTTTCCACCCATGCTCTCATCTAATACTCTCCATGGTAATCTTAGCACCGATGACCCTTCCAAATTATTAAGTTTTCAATCTCCACTCCTCTCGGCGCCGAATCATCAATTTAACAAACCTAATTTAGCAAATCAAATCAACCAATTGCAACAATCCCAAGCATCATGGCCTCAGCAGCAACAACAACAACAGTTACAGCAGCAACAACAGTTACAGCAGCAGCAACAACAGCAACAACAGTTACAGCAGCAACAACAGTTACAGCAGCAGCAGCAGCAACAACAACAGTTACAGTCATTGTCACAAATACCAATGAACCAGTTTCAGCAGCAGAGGCAACAACAGCTGCCTGAATCACAAAACCTGACACTGCTACAGCAACAGATGACTCAGCAGCTGGGACAGCAGCCACAGAAACAGCCACTGTCATCTCAACATGCTATGAATAACGGTGTAATTGCTTCTAACCAGATTTCAAATCAGTTTGCACAGCAACCGGTAACTTACGCTCAGCTTCAGCAACAACAATTACTCCCAGGAAGTATCCCACTCCAGCAAAGTATCCAATCAGCCAGTAAGAATACATTCCCACTGGCATCCTTACCACAAGACTCACAATTTCAGCAACAGATAGACCAACAAGCAAGTCTCTTACAAAGGCAGCAGCAACAAACACAGTTACAACAATCTCCACTGCAGGTATTGCAACAAAGCCAGCAACAAAGGGTGACACCAAATCTGCCAGTGGCTCAAATGTCTCAACAAAACACCTCAGACCAACAATTGCAGCTACAGTTTTTGCACAAATTGCAGCAGCAGCAGCAGCAACAACAATTTCTTTCGACGTCTAGCCCACTTTTACAATCTCAGTTTCTACAACAAAATACTCACCCACAAAGCCAGCAATTACCACAGCTTCCTATATCCCAACATCATACTCAACAGCTTGGCAGTAATGCATTTTCAACAGAGAAGCTTCTTAACAGCAACAATCTGTCTTCATCTCTTATGCAATCACAACAGTTGTCTGTGAATCAAACCCTGAATACGCAGAAGCCACTCTCAATTACTAGAGTTCCCTCTACACTTACAGATGGAGAGGCTCCATCATGCTCAACTTCGCCATCTACAAATAACTGCCAGATATCTCAACCAAACAGTCTGAAAAGAAATCAACAAGTACCAACTACAATAGGCGGGATTTTGGCAGCAGAGCCTGCCAGTAATCTGATACAGGACCTTCAGAGTAAGTCTGACATGCATATCAAACACGAGTTCTCAAATGCAAAAGGATCTGACCAGCTAAAGTATAAAGGCATAACTACTGATCAGCTGGAAGCTTCTTCTGGAACATCTTACTGTATGGATCCTGGCAATGTTCAGCAGAGTTTGCCACTATCCAACTTCGGCATGGAAGGCGACGTCCAATCGAATCCTAGAAACAATCTGACATTTGACTCTAATCTTGATGGTTTAATGTCTGATACTATGCTTTCAAGGGGTTATGATTCTCAGAAAGATCTTCAAAACTTGTTGTCTAATTATGGGAGTGCTCCAAGAGACATTGAAACTGAGTTGTCCACTGCTGACATCAGCTCACAGTCGTTTGGATTGCCAGACACACTTTTTAAGCCTGGTTGCTCAAATGATGTTGGCATTAATGATACTTCTGGAGTTTTGAACAATGGCTTGCGGGCAAACCAAACTCAACGAATGCGAACATATACTAAGGTACAAAAGCGTGGCTCTGTTGGAAGATGTATTGATGTCACCCGTTACAAGGGGTATGATGAACTCCGGTATGATTTGGCAAGAATGTTTGGGATTGAAGGGCAACTAGAAGATCCTCAAAGGACTGACTGGAAATTAGTATATGTAGATCATGAAAATGACATCCTTCTTGTTGGTGATGACCCTTGGGAGGAATTTGTAAGTTGTGTTCAAAGTATAAAGATATTGTCATCTGCTGAGGTGCAGCAAATGAGCTTGGATGGTGATTTAGGTAATGTTCAAATCCCAAATCAAGCATCCAGTGGGGCAGATAGTGGCAATGCATGGAGGGGACAGTATGATGATAACTCTGCAGCCTCATTCAATAGGTGA 3408 0.4334 MKAPPNGFLPNSGEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKQTNFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVTKYDKEAILASDFGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVAKDLHDNSWAFRHIYRGQPKRHLLTTGWSVFISTKRLFAGDSVLFIRDEKQQLLLGLRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIYYNPRASPSEFVIPLAKYNKAMYAQVSLGMRFRMMFETEESGVRRYMGTVTGISDLDPVRWKNSQWRNLQIGWDESSAGERPSRVSIWDVEPVVTPFYICPPPFFRQKFPRQPGMPDDESDVENAFKRAMPWLGDEFGMKDASSSGFPGLSLVQWMSMQQNNQFSGGQSGCFPPMLSSNTLHGNLSTDDPSKLLSFQSPLLSAPNHQFNKPNLANQINQLQQSQASWPQQQQQQQLQQQQQLQQQQQQQQQLQQQQQLQQQQQQQQQLQSLSQIPMNQFQQQRQQQLPESQNLTLLQQQMTQQLGQQPQKQPLSSQHAMNNGVIASNQISNQFAQQPVTYAQLQQQQLLPGSIPLQQSIQSASKNTFPLASLPQDSQFQQQIDQQASLLQRQQQQTQLQQSPLQVLQQSQQQRVTPNLPVAQMSQQNTSDQQLQLQFLHKLQQQQQQQQFLSTSSPLLQSQFLQQNTHPQSQQLPQLPISQHHTQQLGSNAFSTEKLLNSNNLSSSLMQSQQLSVNQTLNTQKPLSITRVPSTLTDGEAPSCSTSPSTNNCQISQPNSLKRNQQVPTTIGGILAAEPASNLIQDLQSKSDMHIKHEFSNAKGSDQLKYKGITTDQLEASSGTSYCMDPGNVQQSLPLSNFGMEGDVQSNPRNNLTFDSNLDGLMSDTMLSRGYDSQKDLQNLLSNYGSAPRDIETELSTADISSQSFGLPDTLFKPGCSNDVGINDTSGVLNNGLRANQTQRMRTYTKVQKRGSVGRCIDVTRYKGYDELRYDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGNVQIPNQASSGADSGNAWRGQYDDNSAASFNR 1135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04287 1135 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Vifa4g04287 1135 MobiDBLite consensus disorder prediction 798 825 - -
Vifa4g04287 1135 Pfam AUX/IAA family 1003 1094 IPR033389 -
Vifa4g04287 1135 SUPERFAMILY CAD & PB1 domains 1021 1086 - -
Vifa4g04287 1135 FunFam Auxin response factor 1003 1097 - -
Vifa4g04287 1135 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 611 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vifa4g04287 1135 FunFam Auxin response factor 124 228 - -
Vifa4g04287 1135 ProSiteProfiles PB1 domain profile. 1008 1101 IPR000270 GO:0005515
Vifa4g04287 1135 MobiDBLite consensus disorder prediction 1104 1135 - -
Vifa4g04287 1135 Coils Coil 493 535 - -
Vifa4g04287 1135 Gene3D - 289 360 - -
Vifa4g04287 1135 CDD B3_DNA 125 217 IPR003340 GO:0003677
Vifa4g04287 1135 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Vifa4g04287 1135 Gene3D - 124 227 IPR015300 -
Vifa4g04287 1135 FunFam Auxin response factor 289 361 - -
Vifa4g04287 1135 Gene3D - 1003 1097 - -
Vifa4g04287 1135 SMART B3_2 126 228 IPR003340 GO:0003677
Vifa4g04287 1135 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vifa4g04287 1135 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04287 Vifa-Chr4 1354750438 1354755918 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04287 1 488 B3 DNA Binding Superfamily AT1G19220 82.992 0.0 848
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vifa4g04287 AUX_IAA 2.4e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04287 K14486 - gmx:100816054 1615.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04287 4 1354750438 1354755918 Vifa4g04287 4 1354750438 1354755918 ECH