Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04286 ATGGGAACACGGCCGCAGCAATCGCGTGTAGATGAAGAGGACGATGAACTGCTCGGTTGTGGAACGACGATTTCCGGCCAATCAGGCTCCACAAGCCGGAGTGCTGGGTTGGGGACCACCGCTGGTGATAGCGCTGCTCTCAAATTGAATCACCTTGACATACACGACGATGATGCTGCCTCACAGGGAGTAGTTGCAAGCAAGAAGAAAAAGAGAGGCCAACGAGCTGTTGGGGGTGATAAGAGTGGAAGAGGGCTTCGCCAATTTAGTATGAAAGAAAGTAGAGGAAGAACAACTTACAATGAGGTGGCAGATGAGCTTGTGGCTGAGTTTTCTGATCCAAGCAATAGTGTCTTGACCCCTGATCAGCAACAATATGATGAGAAAAACATCCGTCGAAGGGTCTATGATGCTCTGAATGTTCTCATGGCTATGGATATTATTTCCAAGGATAAAAAGGAAATACAATGGAAAGGTCTTCCTCGTACCAGTCAGAGTGATATTGAAGAACTAAAGACAGAGCGTCTTGGGCGCAGGAATAGAATTGAAAGGAAAACAGCCTATCTGAAGGAGCTTGAGGAGCAATTTGTAGGTCTTCAGAAACTTATCCAACGAAATGAGCAAATATGTATCTCAGGAAATCCTCCCAGTGGAGGTGTATCGTTACCTTTTATTCTCGTACAGACACGTCCTCATGCAACTGTTGAAGTGGAAATATCAGAAGACATGCAGCTTGTTCATTTTGATTTCAACAGTTCTTTTGGGATTCATCAAATGGCAAATGGAAATAGAAAAAAGGCTACATGGCTTCATCCCAATACAAGGCAACAACATAACTCTAATGATTGTGGATACTATGTGATGAAAAATATGTTGGATATTGTCTCTGCTAATATAACCGAGAATTGGATGCAGGTATTTGATGACCCAACAGAATTAACACCAGATGATTTGTATGATTTGCGACTTCGTTGGGCAAAATGTTTCTTTGACTTACATGGAACTTAA 1008 0.4286 MGTRPQQSRVDEEDDELLGCGTTISGQSGSTSRSAGLGTTAGDSAALKLNHLDIHDDDAASQGVVASKKKKRGQRAVGGDKSGRGLRQFSMKESRGRTTYNEVADELVAEFSDPSNSVLTPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSQSDIEELKTERLGRRNRIERKTAYLKELEEQFVGLQKLIQRNEQICISGNPPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSSFGIHQMANGNRKKATWLHPNTRQQHNSNDCGYYVMKNMLDIVSANITENWMQVFDDPTELTPDDLYDLRLRWAKCFFDLHGT 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04286 335 Gene3D - 76 164 IPR036388 -
Vifa4g04286 335 MobiDBLite consensus disorder prediction 60 98 - -
Vifa4g04286 335 FunFam Transcription factor-like protein DPB 76 164 - -
Vifa4g04286 335 Gene3D Transcription factor DP 165 309 IPR038168 -
Vifa4g04286 335 SMART E2F_TDP_2 81 159 IPR003316 GO:0005667|GO:0006355
Vifa4g04286 335 SUPERFAMILY E2F-DP heterodimerization region 166 258 IPR037241 -
Vifa4g04286 335 MobiDBLite consensus disorder prediction 21 39 - -
Vifa4g04286 335 SUPERFAMILY "Winged helix" DNA-binding domain 86 160 IPR036390 -
Vifa4g04286 335 MobiDBLite consensus disorder prediction 1 39 - -
Vifa4g04286 335 SMART DP_2 166 308 IPR014889 -
Vifa4g04286 335 Pfam Transcription factor DP 167 258 IPR014889 -
Vifa4g04286 335 CDD DP_DD 164 257 IPR014889 -
Vifa4g04286 335 SUPERFAMILY Cysteine proteinases 265 332 IPR038765 -
Vifa4g04286 335 Coils Coil 189 209 - -
Vifa4g04286 335 PANTHER TRANSCRIPTION FACTOR DP 39 258 IPR015648 GO:0005667|GO:0051726
Vifa4g04286 335 Pfam E2F/DP family winged-helix DNA-binding domain 92 159 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04286 Vifa-Chr4 1353894820 1353898106 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04286 54 257 E2F-DP Transcription Factor Family AT5G02470 49.289 2.91e-62 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vifa4g04286 DP 6.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04286 K04683 - gmx:100781272 398.282