Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04285 ATGGCGATACATTTATCCAAAACTTCTAGCCCGAACACACGCAATGGAGCCGTAAACAGTCAAGTGAAATCCAATTCACGAAATCGTTTGATTTCTGGACAGCATCATTGTGGTAAAGGGCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATTGATTTTCGACGCAATGAAAAAGACATATATGGTAGAATTGTAACTATCGAATACGACCCTAATCGAAATGCACACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACACCCCAGAGGGGCTATAATTGGAGATACCATTATTTATGGTACAAAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGCCGTATGCTTTGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTGATTGATCAAAAAGACGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATAACACTTGGAAAGGGTGGACAATTAGCTAGAGCAGCGGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGTAAATCAGCAACATTAAAATTACCTTCTGGAGAGGTCCGTTTGATATCAAAAAACTGCTCAGCAACAGTCGGACAAGTGGGGAATGTTGGGGTAAACCAGAAAAGTTTGGGCAGAGCCGGAGCTAAACGTTGGCGAGGCAAGCGTCCTGTAGTAAGAGGGGTAGTTATGAACCCTGTAGACCATCCACATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCTCAACTCCTTGGGGGTATCCTGCACTTGGAAGAAGAACTAGAAAAAGGAAGAAATATAGTGATAATTTGATTCTTCGTCGCCGTAGTCAATAG 903 0.433 MAIHLSKTSSPNTRNGAVNSQVKSNSRNRLISGQHHCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAHICLIHYGDGEKRYILHPRGAIIGDTIIYGTKVPIKMGNALPLSAPYALEEACTVWEGVLIDQKDESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGAKRWRGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPSTPWGYPALGRRTRKRKKYSDNLILRRRSQ 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04285 300 ProSitePatterns Ribosomal protein L2 signature. 242 253 IPR022671 GO:0003735|GO:0005840|GO:0006412
Vifa4g04285 300 SMART Ribosomal_L2_C_2 122 277 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vifa4g04285 300 Gene3D Ribosomal protein L2, domain 3 221 299 IPR014726 -
Vifa4g04285 300 FunFam 50S ribosomal protein L2, chloroplastic 145 220 - -
Vifa4g04285 300 Pfam Ribosomal Proteins L2, C-terminal domain 158 275 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vifa4g04285 300 Hamap 50S ribosomal protein L2 [rplB]. 1 299 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Vifa4g04285 300 NCBIfam 50S ribosomal protein L2 157 299 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Vifa4g04285 300 Pfam Ribosomal Proteins L2, RNA binding domain 40 115 IPR022666 GO:0003735|GO:0005840|GO:0006412
Vifa4g04285 300 PANTHER RIBOSOMAL PROTEIN L2 29 299 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vifa4g04285 300 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 14 133 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vifa4g04285 300 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 155 300 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vifa4g04285 300 Gene3D - 1 112 IPR012340 -
Vifa4g04285 300 SMART Ribosomal_L2_2 40 116 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vifa4g04285 300 FunFam 50S ribosomal protein L2 220 300 - -
Vifa4g04285 300 Gene3D - 116 220 IPR014722 -
Vifa4g04285 300 SUPERFAMILY Translation proteins SH3-like domain 158 297 IPR008991 -
Vifa4g04285 300 SUPERFAMILY Nucleic acid-binding proteins 3 123 IPR012340 -
Vifa4g04285 300 MobiDBLite consensus disorder prediction 1 28 - -
Vifa4g04285 300 MobiDBLite consensus disorder prediction 250 300 - -
Vifa4g04285 300 FunFam 50S ribosomal protein L2, chloroplastic 1 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04285 Vifa-Chr4 1353798494 1353800023 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04285 51 259 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 32.579 5.68e-24 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04285 K02886 - cave:30215254 512.686