Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04281 ATGGCAAAATCTATACCAAAAATTGGTTCACGTAAAACTGGACGTATTGGTTCGCGTAAGCATCCTCGTAAAATACCAAAGGGGGTTATTTATATTCAAGCTAGTTTCAACAATACCATTGTGACTGTTACAGATGTAAGAGGTCGGGTGATTTCTTGGTCCTCCGCCGGTTCATGTGGATTCAAGGGTACACGAAGGGGGACACCATTTGCCGCTCTAACCGCAGCGGGAAATGCTATTCAAACAGTAGTCGATCAAGGCATGCAACGAGCAGACGTCATGATAAAAGGTCCCGGTCTAGGAAGAGAGGCGGCATTAAGAGCTATTTCTGGAAGTCGGATACGAGTAAGGGTTATACGGGATGTAACCCCTATGTCACATAATGGATGTAGGGCTCCTAAAAAAAGACGTGTGTAA 417 0.4484 MAKSIPKIGSRKTGRIGSRKHPRKIPKGVIYIQASFNNTIVTVTDVRGRVISWSSAGSCGFKGTRRGTPFAALTAAGNAIQTVVDQGMQRADVMIKGPGLGREAALRAISGSRIRVRVIRDVTPMSHNGCRAPKKRRV 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04281 138 Hamap 30S ribosomal protein S11 [rpsK]. 11 138 IPR001971 GO:0003735|GO:0005840|GO:0006412
Vifa4g04281 138 MobiDBLite consensus disorder prediction 1 21 - -
Vifa4g04281 138 PIRSF RPS11p_RPS11a_RPS14e_RPS11o 6 138 IPR001971 GO:0003735|GO:0005840|GO:0006412
Vifa4g04281 138 SUPERFAMILY Translational machinery components 24 138 - -
Vifa4g04281 138 NCBIfam 30S ribosomal protein S11 20 135 IPR019981 GO:0003735|GO:0005840|GO:0006412
Vifa4g04281 138 Gene3D Ribosomal protein S11 12 138 IPR036967 GO:0003735|GO:0005840|GO:0006412
Vifa4g04281 138 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 27 136 IPR001971 GO:0003735|GO:0005840|GO:0006412
Vifa4g04281 138 Pfam Ribosomal protein S11 28 137 IPR001971 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04281 Vifa-Chr4 1353792797 1353793213 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04281 28 125 Cytoplasmic Ribosomal Protein Gene Family AT3G11510 35.514 3.19e-12 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04281 K02948 - csin:14412458 229.565