Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04273 ATGGTAACCATTCGTGCAGATGAAATTAGTAAAATTATCCGTGAACGTATTGAGCAATATAATACCGAAGTAAAAATTGTAAATACAGGTACCGTACTTCAAGTAGGCGATGGCATTGCTCGTATTTATGGTCTTGATGAAGTAATGGCGGGTGAATTAGTAGAATTTGAAGAAAGTACAGTAGGCATTGCTTTGAATTTGGAATCAAAAAATGTTGGTGTTGTATTAATGGGTGATGGTTTGATGATACAAGAGGGAAGTTCCGTAAAAGCAACAGGAAGAATTGCTCAGATACCGGTAAGTGAGGGTTATTTGGGTCGTGTTGTAAATGCCCTAGCTAAACCTATTGACGGTCGAGGAGAAATTTCAGCTTCGGAATCTCGGTTAATCGAATCTCCCGCTCCCGGTATTATTTCCAGACGGTCCGTGTATGAGCCCCTTCAAACGGGACTTATTGCTATTGATTCTATGATCCCTATAGGGCGTGGCCAGCGAGAATTGATTATTGGGGACAGACAAACTGGTAAAACAGCAGTAGCTACAGATACGATTCTCAATCAACAGGGACAAAATGTAGTATGTGTTTATGTAGCTATTGGTCAAAAAGCATCTTCTGTGGCTCAAGTCGTAACTTCTTTACAAGAAAGAGGAGCAATGGAATACACTATTATAGTGGCTGAAACAGCAAATTCCCCAGCTACATTACAATACCTCGCGCCTTATACAGGAGCAGCTCTGGCTGAATATTTTATGTACCGTGAACGCCACACTTTAATCATTTATGATGATCCCTCCAAACAAGCACAGGCTTATCGCCAAATGTCTCTTCTATTACGAAGACCACCAGGTCGCGAAGCTTATCCCGGAGATGTTTTTTATTTACATTCGCGTCTTTTGGAAAGAGCCGCTAAATTAAGTTCTCAGTTAGGTGAAGGAAGTATGACTGCTTTACCAATAGTTGAGACCCAATCAGGAGATGTTTCAGCTTATATTCCTACTAATGTAATTTCTATTACAGACGGCCAAATATTCTTATCTGCCGATTTATTCAATGCTGGGATCAGACCCGCAATTAATGTGGGTATTTCCGTTTCCAGAGTTGGATCGGCGGCTCAAATAAAAGCCATGAAACAAGTAGCTGGTAAATTAAAATTGGAATTGGCACAATTCGCAGAATTAGAAGCTTTTGCACAATTCTCTTCAGATCTCGATAAAGCCACGCAAAATCAATTGGCAAGAGGTCAACGATTGCGCGAGTTGCTTAAACAATCCCAATCAGCTCCTCTTACTGTGGAAGAACAGATAATAACTATTTATACTGGAACGAACGGTTATCTTGATTCATTAGAAATTGAACAGGAACAAGTAGAAAAAAATTGA 1380 0.4 MVTIRADEISKIIRERIEQYNTEVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEESTVGIALNLESKNVGVVLMGDGLMIQEGSSVKATGRIAQIPVSEGYLGRVVNALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVVCVYVAIGQKASSVAQVVTSLQERGAMEYTIIVAETANSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDPSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFSSDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIITIYTGTNGYLDSLEIEQEQVEKN 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04273 459 Gene3D - 3 94 IPR023366 -
Vifa4g04273 459 Gene3D - 95 372 IPR027417 -
Vifa4g04273 459 Pfam ATP synthase alpha/beta chain, C terminal domain 372 453 IPR000793 GO:0015986
Vifa4g04273 459 NCBIfam F0F1 ATP synthase subunit alpha 4 453 IPR005294 GO:0015986|GO:0045261|GO:0046933
Vifa4g04273 459 CDD F1-ATPase_alpha_CD 95 368 IPR033732 GO:0032559
Vifa4g04273 459 ProSitePatterns ATP synthase alpha and beta subunits signature. 356 365 IPR020003 GO:0005524
Vifa4g04273 459 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 373 453 - -
Vifa4g04273 459 Pfam ATP synthase alpha/beta family, beta-barrel domain 29 93 IPR004100 GO:0046034|GO:1902600
Vifa4g04273 459 FunFam ATP synthase subunit alpha 1 94 - -
Vifa4g04273 459 FunFam ATP synthase subunit alpha 373 458 - -
Vifa4g04273 459 Coils Coil 446 459 - -
Vifa4g04273 459 Gene3D - 373 458 IPR038376 -
Vifa4g04273 459 CDD ATP-synt_F1_alpha_C 376 453 IPR000793 GO:0015986
Vifa4g04273 459 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 150 365 IPR000194 GO:0005524
Vifa4g04273 459 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 2 455 IPR005294 GO:0015986|GO:0045261|GO:0046933
Vifa4g04273 459 FunFam ATP synthase subunit alpha 95 372 - -
Vifa4g04273 459 Hamap ATP synthase subunit alpha [atpA]. 2 457 IPR005294 GO:0015986|GO:0045261|GO:0046933
Vifa4g04273 459 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 11 95 IPR036121 GO:0046034|GO:1902600
Vifa4g04273 459 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 371 IPR027417 -
Vifa4g04273 459 CDD ATP-synt_F1_alpha_N 28 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04273 Vifa-Chr4 1353766381 1353767913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04273 87 371 Primary Pumps ATPases(2) AT4G38510 30.464 4.21e-31 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04273 K02111 - gmx:3989298 823.157