Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04252 ATGGCGATACATTTATCCAAAACTTCTAGCCCGAACACACGCAATGGAGCCGTAAACAGTCAAGTGAAATCCAATTCACGAAATCGTTTGATTTCTGGACAGCATCATTGTGGTAAAGGGCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATTGATTTTCGACGCAATGAAAAAGACATATATGGTAGAATTGTAACTATCGAATACGACCCTAATCGAAATGCACACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACACCCCAGAGGGGCTATAATTGGAGATACCATTATTTATGGTACAAAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGGATAGACTTCAACAGAAAACTGAAGAAAAGCCGTATGCTTTGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTGATTGATCAAAAAGACGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATAACACTTGGAAAGGGTGGACAATTAGCTAGAGCAGCGGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGTAAATCAGCAACATTAAAATTACCTTCTGGAGAGGTCCGTTTGATATCAAAAAACTGCTCAGCAACAGTCGGACAAGTGGGGAATGTTGGGGTAAACCAGAAAAGTTTGGGCAGAGCCGGAGCTAAACGTTGGCGAGGCAAGCGTCCTGTAGTAAGAGGGGTAGTTATGAACCCTGTAGACCATCCACATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCTCAACTCCTTGGGGGTATCCTGCACTTGGAAGAAGAACTAGAAAAAGGAAGAAATATAGTGATAATTTGATTCTTCGTCGCCGTAGTCAATAG 933 0.4298 MAIHLSKTSSPNTRNGAVNSQVKSNSRNRLISGQHHCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAHICLIHYGDGEKRYILHPRGAIIGDTIIYGTKVPIKMGNALPLSADRLQQKTEEKPYALEEACTVWEGVLIDQKDESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGAKRWRGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPSTPWGYPALGRRTRKRKKYSDNLILRRRSQ 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04252 310 FunFam 50S ribosomal protein L2, chloroplastic 155 230 - -
Vifa4g04252 310 SUPERFAMILY Nucleic acid-binding proteins 3 123 IPR012340 -
Vifa4g04252 310 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 165 310 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vifa4g04252 310 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 14 134 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vifa4g04252 310 SMART Ribosomal_L2_C_2 122 287 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vifa4g04252 310 Gene3D - 1 112 IPR012340 -
Vifa4g04252 310 Gene3D - 116 230 IPR014722 -
Vifa4g04252 310 Hamap 50S ribosomal protein L2 [rplB]. 1 309 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Vifa4g04252 310 SUPERFAMILY Translation proteins SH3-like domain 168 307 IPR008991 -
Vifa4g04252 310 Gene3D Ribosomal protein L2, domain 3 231 309 IPR014726 -
Vifa4g04252 310 SMART Ribosomal_L2_2 40 116 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vifa4g04252 310 FunFam 50S ribosomal protein L2, chloroplastic 1 112 - -
Vifa4g04252 310 PANTHER RIBOSOMAL PROTEIN L2 29 309 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vifa4g04252 310 NCBIfam 50S ribosomal protein L2 167 309 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Vifa4g04252 310 Pfam Ribosomal Proteins L2, RNA binding domain 40 115 IPR022666 GO:0003735|GO:0005840|GO:0006412
Vifa4g04252 310 ProSitePatterns Ribosomal protein L2 signature. 252 263 IPR022671 GO:0003735|GO:0005840|GO:0006412
Vifa4g04252 310 Pfam Ribosomal Proteins L2, C-terminal domain 168 285 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vifa4g04252 310 MobiDBLite consensus disorder prediction 1 28 - -
Vifa4g04252 310 FunFam 50S ribosomal protein L2 230 310 - -
Vifa4g04252 310 MobiDBLite consensus disorder prediction 259 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04252 Vifa-Chr4 1353701150 1353702679 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04252 51 269 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 31.169 1.95e-22 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04252 K02886 - cave:30215254 508.834