Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04231 ATGGGTCACGTTGTAACTGGAACGAAATTATTGACTACACTAATAGCACTCCTTCACATTCTTCCAGTCATTCCAACATTTTCCGAAACCAACCGCCACCGTGAAACCACCCTCTTGGACAAACACTTAACAGCTGCGGAGGAAGGCGACATTAGAGTTGTGAGAGTTCGGAAAGACGGAGCCGGAGACTTCAGGACGGTGACGGAGGCTGTTAAAAGTATTCCGTCGGGGAACAACAGGCGAGTGGTGGTGTGGATTGGTATGGGAGAATATAGAGAGAAGATAACGGTTGATAAGTCGAAAGGTTTTGTAACGTTTTATGGGGAAAGGAATGGGAACGACAATGACATGCCAATTATTACCTACGACGCAACTGCTTTGCATTATGGGACACTTGCTAGCGCAACGGTCGCTGTCGATGCTGATTACTTTGTTGCTGTCAATGTCGCATTTGTGAACTCGTCTCCTATGCCGAATGAAAAAAGTGTTGGAGGACAAGCTTTAGCGATGAGGATATCAGGGGATAAGGCTGCATTCTATAATTGCAAGTTCATTGGATTTCAGGATACTTTGTGTGATGATAAAGGAAGACATTTTTTCAAGGACTGTTTAATTCAAGGAACGTATGATTTCATTTTTGGGAATGGAAAATCCATATATTTGAGAAGTACGATAGAATCGGTTGCGAAGGGTTTGAATGTTATAACAGCGCAAGGTAGGGAAAACGTGTCAGAAGACACTGGATTCGCGTTTGTGCACTGCAAGGTAACTGGAAGTGGTTTCAGAAACACTTACCTCGGACGTGGATGGTTCCACCATCATGAATCCAATGAGACAATCTATTTTGGAGAATACAAGTGCTTTGGACCAGGTGCTGCTTCCTCTGCAGGAAGATTAAAATATCAGAGAATTCTATCTGACGAAGAAGCAAAGCCTTTCTTGAGCATGGCTTATATTCAAGGAGATGATTGGGTTCGTCCACCTCCCAAGTTGTGA 996 0.4367 MGHVVTGTKLLTTLIALLHILPVIPTFSETNRHRETTLLDKHLTAAEEGDIRVVRVRKDGAGDFRTVTEAVKSIPSGNNRRVVVWIGMGEYREKITVDKSKGFVTFYGERNGNDNDMPIITYDATALHYGTLASATVAVDADYFVAVNVAFVNSSPMPNEKSVGGQALAMRISGDKAAFYNCKFIGFQDTLCDDKGRHFFKDCLIQGTYDFIFGNGKSIYLRSTIESVAKGLNVITAQGRENVSEDTGFAFVHCKVTGSGFRNTYLGRGWFHHHESNETIYFGEYKCFGPGAASSAGRLKYQRILSDEEAKPFLSMAYIQGDDWVRPPPKL 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04231 331 Pfam Pectinesterase 54 271 IPR000070 GO:0030599|GO:0042545
Vifa4g04231 331 SUPERFAMILY Pectin lyase-like 53 327 IPR011050 -
Vifa4g04231 331 Gene3D - 51 328 IPR012334 -
Vifa4g04231 331 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 269 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04231 Vifa-Chr4 1348480731 1348482988 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04231 39 331 Carbohydrate Esterase AT5G07410 46.688 2.60e-103 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04231 K01051 - gmx:100790786 465.692