Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04211 ATGGCGTTTCAAGATTTTGACCTCATCACAGAACGACGAAGGAATGAGAAGAAACAACAACTGAAGAAAAGAATTATCATCGGTGTTATTTCTACGGTTGTCCTAGTTGGTATGATAGGTTGTGCATTCTTCGTTGTCACCACAAAATATGGTGGTCTTAATGATAAAGACACGAAAAACGGAGGATCTACACCTTCTAACACCAACAAACACGTTGCGCATTCAGAAAAGATAGTGAAATTAGTATGCAGTACCGCGGATTACAAAGAAAAATGTGAAGGTCCTCTTAACAAAGCAGTGGAAGAGGATCCGAAACTTCAACACCCGAAAGATCTTCTCAAAGTCTACATTAAAATCGTCCAAGAGGAAGTTAACAAAGCGTTTAACAAAACGAACTCGTTCAAATTCAATACCGAACAAGAGAAAGGCGCATTTGAGGATTGTAAACAGCTTATTCAAGATGCTAGGGAGGATTTAGAAGCCTCTATCAGTCAACTTGGAGAAATCGAATTCAAGAAACTTTCTTCAAAAGCACCTGATCTGAACAGTTGGTTAAGTGCTGTAATCTCTTTCCAACAAACATGTGTCGATGGTTTTCCCGAAGGAAAAACGAAGACAGATCTTCAGAAACTCTTCGATGATTCTAAGGAATTTGTCAGCAATTCTCTTGCTATTGTGGCTCAGGTTTCTACATTCCTTTCTACCGTTCAGACCCTTGCGCGCGGCCGTTTGTTGTTAGCCGATAACTCCCCTGTCGCTTCTTTGGATTCCGAAGGCTTACCTTCATGGATCCATCCCGAAGAAAGAAGAGTCTTGAAGGCTTCTGATATTAGGCCTAAACCTAATGTCACCGTTGCAAAAGACGGAAGTGGTGACTTCAAAACCATCTCCGAAGCTTTGGCAGCCATCCCCGCAATCTATCCCGGAAGGTATGTCGTTTATGTTAAAGAAGGTATTTACGACGAAACCGTGACAGTGACCAAGTTAATGCAAAATGTAACCATGTATGGTGATGGATCACAAAAGAGTATTATCACCGGTAACAAAAACTTCAGGGATGGTGTCCGAACCTTCCTTACCGCAAGCTTTGTGGTGCTAGGAGAAGGATTTTTGGGTCTAGCAATGGGATTCAGGAACACAGCCGGTCCAGACGGACATCAAGCGGTGGCAGCCCGAGTCCAAGCCGACCGTGCCATTTTCGCCAACTGTCGTTTCGAGGGTTACCAAGACACGCTCTACACACAAACACACAGACAATTCTACCGCAGCTGCATCGTAGCAGGAACAATCGACTTCATCTTCGGCGACGCAGCAGTGATATTCCAAAACTGTATCATGGTGGTAAGAAAACCATTGGACAACCAACAGAACATAGTGACAGCACAAGGAAGAATGGACAAACAACAAGCAACAGGAACAGTTCTACAAAAATGCACAATCAAAGCCGACGATAAACTAGTACCTGTCGCGACAAAAATTAGAAGTTACCTTGGCAGACCATGGAAGGAGTTTTCAAGAACAATAGTAATGGAAACTGAGATAGGTGAGGTTATTCATCCTGATGGATGGACCCCATGGGAAGGAACCTTCGCGTTAGATACATTGTATTACGCGGAGTTTAATAACTCTGGACCGGGTTCAAGTACTAGTGCAAGGATCAAATGGCCAGGATATAAGGTTATTAACAAAGAAGAGGCTATCAAGTACACAGTACAAAATTTCTTGAAAGGAACATGGGTTCAATCCTCTGGTGTACCTTCTCAACCAGGAATGTACTATTGA 1782 0.4287 MAFQDFDLITERRRNEKKQQLKKRIIIGVISTVVLVGMIGCAFFVVTTKYGGLNDKDTKNGGSTPSNTNKHVAHSEKIVKLVCSTADYKEKCEGPLNKAVEEDPKLQHPKDLLKVYIKIVQEEVNKAFNKTNSFKFNTEQEKGAFEDCKQLIQDAREDLEASISQLGEIEFKKLSSKAPDLNSWLSAVISFQQTCVDGFPEGKTKTDLQKLFDDSKEFVSNSLAIVAQVSTFLSTVQTLARGRLLLADNSPVASLDSEGLPSWIHPEERRVLKASDIRPKPNVTVAKDGSGDFKTISEALAAIPAIYPGRYVVYVKEGIYDETVTVTKLMQNVTMYGDGSQKSIITGNKNFRDGVRTFLTASFVVLGEGFLGLAMGFRNTAGPDGHQAVAARVQADRAIFANCRFEGYQDTLYTQTHRQFYRSCIVAGTIDFIFGDAAVIFQNCIMVVRKPLDNQQNIVTAQGRMDKQQATGTVLQKCTIKADDKLVPVATKIRSYLGRPWKEFSRTIVMETEIGEVIHPDGWTPWEGTFALDTLYYAEFNNSGPGSSTSARIKWPGYKVINKEEAIKYTVQNFLKGTWVQSSGVPSQPGMYY 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04211 593 ProSitePatterns Pectinesterase signature 2. 426 435 IPR033131 -
Vifa4g04211 593 SMART PMEI_2 74 225 IPR006501 GO:0004857
Vifa4g04211 593 PANTHER PECTINESTERASE 34 581 - -
Vifa4g04211 593 SUPERFAMILY Pectin lyase-like 279 585 IPR011050 -
Vifa4g04211 593 NCBIfam pectinesterase inhibitor domain 72 229 IPR006501 GO:0004857
Vifa4g04211 593 Pfam Plant invertase/pectin methylesterase inhibitor 78 225 IPR006501 GO:0004857
Vifa4g04211 593 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 77 228 IPR035513 -
Vifa4g04211 593 FunFam Pectinesterase 75 230 - -
Vifa4g04211 593 CDD PMEI-like_3 81 231 - -
Vifa4g04211 593 Gene3D Invertase/pectin methylesterase inhibitor family protein 75 230 IPR035513 -
Vifa4g04211 593 Pfam Pectinesterase 282 577 IPR000070 GO:0030599|GO:0042545
Vifa4g04211 593 FunFam Pectinesterase 276 591 - -
Vifa4g04211 593 Gene3D - 277 591 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04211 Vifa-Chr4 1341184541 1341186554 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04211 1 592 Carbohydrate Esterase AT2G26450 47.917 0.0 597
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04211 - - gmx:100784679 890.952