Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04209 ATGGCTCTCTCTTTCAAAATCCAACCATTCATCTTCTTCTCCCTCCTACTCACTGCTTCTGCTTCTCCCAATGATTTATCCTGTCTCAAAGTTTCTCCCATCAATTTCACCAACTCTGCTGAAGAAGTTATCACCAATATTCAACAAGTCACCTCCATTTTTTCGCGCTTCACAAATGCTTTGGGACAACCTCACCTCTTAAATGCTGTTTCTGATTGCCTGGATTTACTTGACATGTCCGCAGACCAACTAGACTGGATTATCTCCGCCACTCGGAATCCAACAGGGAAGGATAACAGTACTGGAAATCTAAGCTCTGATCTAAGAACATGGCTGAGCGCTGTTCTTGTGAATCAAGACACGTGTATAGAAGGATTACAAGGTACAAATGTGATGGGTCTTGTATCCACTGATCTTTATCGTGTAATGTCCGCGGTGAAGAATCTTCTTGATCAAGTAATTCCCATCAACGATCAACTCGCAACTGCTACCAGTTCGGATCAATTTCCTTCATGGATGATAGACAACGACATGAAGGTGTTGCAGGAAAACGAAGTTACTGCAGACGTTGTTGTGGCTGCGGATGGAAGTGGGAATTACAGTAACGTGACGGATGCGGTAAATGCAGCACCTGAACTCAACATGAAAAGATATGTTATATATGTGAAGAAAGGTGTTTATAATGAGAATGTTGAGATTACGAAGAAGAAATGGAATGTTTTGATGATCGGTGAAGGTATGTATGCTACTGTTATCTCCGGTAGTCGGAGTTGTGTCGACGGTTGGAAGACTTACGGATCAGCTACCTTTGCTGTAAATGGTAGAGGGTTCATTGCACGCGACATTTCATTTCGAAACACTGCAGGTCCCACAAAGGATCAAGCAGTGGCATTAAGATCAGACTCTGACCTCTCTGCATTTCACAGATGTGGGATATTCGGCTATCAAGATAGCCTATATTCCCACAGCAATCGTCAATTCTACAGAGACTGCACAATAGCTGGCACCGTGGATTTCATCTTTGGATATGCCACGGCCATGTTCCAGAATTGTCAAATAATAGCCAAGCAAGGGAGGCCTGGACAAAAGAACACTGTTACCGCTCATGGAAGGATAGACCCAAACCAACCAACCGGTTTCTCCTTCCAGTTTTGCAACATCTCAGCAGAGAATGATACCGTCCCAACATACCTTGGTAGACCCTGGAAGAATTTTTCACGGACAGTTTTCATGCAATCCCACATGAGTAACGCGATAAGACCAGAAGGGTGGTTAGAGTGGGACGAAAGTTTTGCTTTTGACACATTGTACTACGGTGAATACATGAACTCTGGACCAGGTGCTGAGGTAGCTAACAGAGTGAAATGGCCGGGTTACCATGTGTTGAATGACTCCAGCGACGCTGATAACTATACCGTGGCTCAATTTATTGAGGGAGATCTTTGGTTATCCTCCACTGGTGTTAATTACACTTCTGGTTTGTAA 1485 0.4384 MALSFKIQPFIFFSLLLTASASPNDLSCLKVSPINFTNSAEEVITNIQQVTSIFSRFTNALGQPHLLNAVSDCLDLLDMSADQLDWIISATRNPTGKDNSTGNLSSDLRTWLSAVLVNQDTCIEGLQGTNVMGLVSTDLYRVMSAVKNLLDQVIPINDQLATATSSDQFPSWMIDNDMKVLQENEVTADVVVAADGSGNYSNVTDAVNAAPELNMKRYVIYVKKGVYNENVEITKKKWNVLMIGEGMYATVISGSRSCVDGWKTYGSATFAVNGRGFIARDISFRNTAGPTKDQAVALRSDSDLSAFHRCGIFGYQDSLYSHSNRQFYRDCTIAGTVDFIFGYATAMFQNCQIIAKQGRPGQKNTVTAHGRIDPNQPTGFSFQFCNISAENDTVPTYLGRPWKNFSRTVFMQSHMSNAIRPEGWLEWDESFAFDTLYYGEYMNSGPGAEVANRVKWPGYHVLNDSSDADNYTVAQFIEGDLWLSSTGVNYTSGL 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04209 494 Gene3D - 183 494 IPR012334 -
Vifa4g04209 494 SMART PMEI_2 18 156 IPR006501 GO:0004857
Vifa4g04209 494 ProSitePatterns Pectinesterase signature 1. 214 233 IPR018040 -
Vifa4g04209 494 CDD PMEI-like_4 10 157 - -
Vifa4g04209 494 PANTHER PECTINESTERASE 35 484 - -
Vifa4g04209 494 Gene3D Invertase/pectin methylesterase inhibitor family protein 20 161 IPR035513 -
Vifa4g04209 494 ProSitePatterns Pectinesterase signature 2. 333 342 IPR033131 -
Vifa4g04209 494 Pfam Plant invertase/pectin methylesterase inhibitor 47 141 IPR006501 GO:0004857
Vifa4g04209 494 FunFam Pectinesterase 183 494 - -
Vifa4g04209 494 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 160 IPR035513 -
Vifa4g04209 494 SUPERFAMILY Pectin lyase-like 187 493 IPR011050 -
Vifa4g04209 494 Pfam Pectinesterase 189 480 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04209 Vifa-Chr4 1340673565 1340675269 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04209 10 494 Carbohydrate Esterase AT3G43270 56.725 0.0 600
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04209 K01051 - gmx:100814987 648.277